Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B07
         (865 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep: Lipo...    44   0.004
UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n...    38   0.25 
UniRef50_Q01T36 Cluster: 4-amino-4-deoxy-L-arabinose transferase...    34   4.0  
UniRef50_Q53RB7 Cluster: HEAT repeat, putative; n=5; Oryza sativ...    33   7.1  

>UniRef50_P85195 Cluster: Lipocalin-2; n=2; Obtectomera|Rep:
           Lipocalin-2 - Lonomia obliqua (Moth)
          Length = 53

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 194 EGHARAAEAVVQHNTEAVRQAAEASREIHET 286
           + HARA EA VQ+NT+A RQ AEA+R  HE+
Sbjct: 16  QDHARAVEAAVQYNTDATRQVAEANRAAHES 46


>UniRef50_O52057 Cluster: Sulfur globule protein CV1 precursor; n=1;
           Allochromatium vinosum|Rep: Sulfur globule protein CV1
           precursor - Chromatium vinosum (Allochromatium vinosum)
          Length = 127

 Score = 38.3 bits (85), Expect = 0.25
 Identities = 18/27 (66%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 410 APYGIAAPYGIAAPYTAYGA-YGVAPY 487
           APYG  APYG  APY  YGA YG  PY
Sbjct: 82  APYGYGAPYGYGAPY-GYGAPYGAMPY 107



 Score = 35.5 bits (78), Expect = 1.7
 Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 410 APYGIAAPYGIAAPYTAYGA-YGV-APY 487
           APYG  APYG  APY  YGA YG  APY
Sbjct: 76  APYGYGAPYGYGAPY-GYGAPYGYGAPY 102



 Score = 33.1 bits (72), Expect = 9.3
 Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 416 YGIAAPYGIAAPYTAYGA-YGV-APYSLG 496
           YG  APYG  APY  YGA YG  APY  G
Sbjct: 72  YGYGAPYGYGAPY-GYGAPYGYGAPYGYG 99


>UniRef50_Q01T36 Cluster: 4-amino-4-deoxy-L-arabinose transferase
           and related glycosyltransferases of PMT family-like
           protein precursor; n=1; Solibacter usitatus
           Ellin6076|Rep: 4-amino-4-deoxy-L-arabinose transferase
           and related glycosyltransferases of PMT family-like
           protein precursor - Solibacter usitatus (strain
           Ellin6076)
          Length = 882

 Score = 34.3 bits (75), Expect = 4.0
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 413 PYGIAAPYGIAAPYTAYGAYGVAPYSLGVHAW*TDHDREPLFSNI-SYAKIACFFLIADI 589
           P GI A +  AA YTA  A G+ PY+LG+  W     R+P+   + +   +A  F++  +
Sbjct: 253 PIGILAGFSFAAKYTA--AIGI-PYALGIVIWTRWRTRKPVLRPVLAVCGVAALFILPWM 309

Query: 590 IE 595
           I+
Sbjct: 310 IK 311


>UniRef50_Q53RB7 Cluster: HEAT repeat, putative; n=5; Oryza
            sativa|Rep: HEAT repeat, putative - Oryza sativa subsp.
            japonica (Rice)
          Length = 1086

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 580  SRYY*ITLHDRPCQLLNALVIDNVVPGVDRV-W*HRSTVGISR-IPGWRLVLPFLQKLFS 753
            SR Y +  H     L NA+  DN V  + ++   HR  +  S+ +P W   LP    L  
Sbjct: 905  SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPIKNDLIE 964

Query: 754  DLLLNDNQVSFLNK 795
              ++++   + L K
Sbjct: 965  AKIVHEQLCTMLEK 978


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,158,188
Number of Sequences: 1657284
Number of extensions: 8605605
Number of successful extensions: 21983
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21958
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76652910257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)