Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B07
         (865 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)              29   6.5  
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   6.5  
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  

>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 493
           +T PYGI  PY I  PY     Y +  PY +
Sbjct: 583 ITCPYGITYPYDITCPYNITCPYDITWPYDI 613



 Score = 31.5 bits (68), Expect = 0.92
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 493
           +T PYGI   YGI  PY     +G+  PY +
Sbjct: 619 ITCPYGITCLYGITCPYGITCQFGITCPYDI 649



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPY---TAYG---AYGVAPYSLGV 499
           +T PY I  PY I  PY     YG   AYG+  YS G+
Sbjct: 463 ITCPYDITCPYDIKCPYDITCLYGFTCAYGIT-YSFGI 499



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 493
           +T PYGI   +GI  PY     Y +  PY +
Sbjct: 631 ITCPYGITCQFGITCPYDITCPYDITCPYDI 661



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 493
           +T PY I  PY I  PY     YG+  PY +
Sbjct: 607 ITWPYDITWPYDITCPYGITCLYGITCPYGI 637



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 493
           +T PY I  PY I  PY     Y +  PY +
Sbjct: 643 ITCPYDITCPYDITCPYDITCPYDITYPYDI 673



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 493
           +T PY I  PY I  PY     Y +  PY +
Sbjct: 499 ITCPYDITCPYDITCPYYITCPYDITYPYDI 529



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 493
           +T PY I  PY I  PY     Y +  PY +
Sbjct: 595 ITCPYNITCPYDITWPYDITWPYDITCPYGI 625



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 493
           +T PY I  PY I  PY     Y +  PY +
Sbjct: 517 ITCPYDITYPYDITCPYDITCPYDITYPYDI 547



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 493
           +T PY I  PY I  PY     Y +  PY +
Sbjct: 715 ITYPYDITCPYHITCPYDITWPYDITWPYDI 745


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 410  APYGIAAPYGIAAPYTAYGAYGV-APYSLG 496
            APY    PY I  PY     Y   APYS G
Sbjct: 1335 APYNTGEPYNIGVPYNTGAPYNTGAPYSTG 1364


>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
          Length = 421

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 410 APYGIAAPYGIAAPYTAYGAYGV-APYSL 493
           AP+G+  PYG + P +    YG   PY L
Sbjct: 381 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 409


>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1387

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 410  APYGIAAPYGIAAPYTAYGAYGV-APYSL 493
            AP+G+  PYG + P +    YG   PY L
Sbjct: 1224 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1252


>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1984

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 410  APYGIAAPYGIAAPYTAYGAYGV-APYSL 493
            AP+G+  PYG + P +    YG   PY L
Sbjct: 1449 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1477


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,017,066
Number of Sequences: 59808
Number of extensions: 274764
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)