Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B04
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    48   2e-06
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    36   0.007
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    29   0.62 
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    28   1.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   3.3  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    27   4.4  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    27   4.4  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   7.6  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = +2

Query: 587 WFVMFYGAACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHVGKLPAFLLF 766
           WF+ FY + C +C  +   W ++   ++ ++NVA I+ +++     K++ +   P FL F
Sbjct: 301 WFIQFYSSECDDCDDVSTAWYAMANRMRGKLNVAHINCAVS-KRACKQYSIQYFPTFLFF 359

Query: 767 RLGKVYRY-DLP-KNDVKSF 820
           +      Y  LP + D+ SF
Sbjct: 360 KEEAFVEYVGLPNEGDLVSF 379



 Score = 32.3 bits (70), Expect = 0.088
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 581 GDWFVMFYGAACVECQRLHAVWESVGATLKSRI 679
           G WF+ +Y  +C  C+RL  +W+++    K ++
Sbjct: 43  GTWFIKYYLPSCGACKRLGPMWDNMVEKAKEQV 75


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
 Frame = +2

Query: 449 LLYSGEADENEIYGFFEKNQTPAVKELTDKIFEHLTQAATGATTGDWFVMFYGAACVECQ 628
           L+Y+G+ D   I  F   +  P + EL    F    Q+  G   G   ++FY +      
Sbjct: 210 LVYTGDWDPASIADFIGVSSIPLLDELNQMTFGKYQQS--GLPLG---IIFYNST-ESRD 263

Query: 629 RLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHV-GKLPAFLLFRLGKVYRYDLPKN 805
            L+ V++ +    +  +  A +DA   G   AK+ +V    PAF++  L  + +Y  P  
Sbjct: 264 ELYDVFQPLAKKYQDTLRFAFLDAVRYGA-VAKQMNVESDWPAFVIANLKSMLKYPFPTT 322

Query: 806 DV--KSFVAFAXD 838
           ++  K+   F  D
Sbjct: 323 ELTAKAMTKFVGD 335


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 41/171 (23%), Positives = 62/171 (36%), Gaps = 11/171 (6%)
 Frame = +2

Query: 287 CETCKKLEQHVESLQEDFKKHLNAMSVKT---VNSHLARLYNPSKEPALIFYRHGVA--L 451
           C  CK L    E L   F+ H + +  K     +S +A  Y+ +  P LI++    +  +
Sbjct: 51  CGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPV 110

Query: 452 LYSGEADENEIYGFF-EKNQTPAVKELTDKIFEHLTQAATGATT----GDWFVMFYGAAC 616
            YS   D + +  F  EK      K +       L              D  V FY   C
Sbjct: 111 QYSNARDVDSLTQFVSEKTGIKKRKIVLPSNVVELDSLNFDKVVMDDKKDVLVEFYADWC 170

Query: 617 VECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFH-VGKLPAFLLF 766
             C+RL   +E++G   K+  NV  +  +        R H V   P    F
Sbjct: 171 GYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFF 221


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 470 DENEIYGFFEKNQTPAVKELTDKIFEHLTQAATGATT 580
           DE+EIY +FE   T   K +T+++ E L   A+G  T
Sbjct: 103 DEHEIYAYFETPTTE--KAVTEQLAEKLCVDASGYVT 137


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +2

Query: 368 KTVNSHLARLYNPSKEPALIFYRHGVALLYSGEA-----DENEIYGFFEKNQTPAVKELT 532
           +T +  + +  N ++ P L+  RHGVA  YS  +     +  ++  +    + P V ELT
Sbjct: 270 RTDDEKVIKTLNVTRLPHLVAIRHGVAFSYSERSVSAMRNTFQLIKWASLLKYPLVPELT 329

Query: 533 DKIFEHL 553
             + E+L
Sbjct: 330 PAVVENL 336


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
 Frame = -3

Query: 809 HHFLASHICTLCQGETEGMLAIFQHEIF*QC*HQLNLH-----QCEQHLFCSLMLLQHFP 645
           HHFL   + T    E E  +    H +  +    + L      QCEQ+  C+L+   +  
Sbjct: 39  HHFLCEKLATFPYEEIEFFIPQLIHLVLNKDSESVALEEFIISQCEQNTQCALITFWYLQ 98

Query: 644 KQHVAFGIQHKLPHKT 597
              V  G+Q   PH +
Sbjct: 99  AHMVDLGLQ---PHSS 111


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 524 ELTDKIFEHLTQAATGATTGDWFVMFYGAACVECQRLHAVWESVGATLKSRINVARID 697
           EL  K F    +A      G   V+FY   C  C++L   ++ + + L S + V  +D
Sbjct: 35  ELNSKNFRKFVKAK-----GPSLVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVD 87


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 166 YKRYYKIHFNFKW*KQFMCFNIFISIFVEVSLLTLFI 56
           Y  Y+K  F F W K      + I     V L+ LFI
Sbjct: 213 YHVYHKAPFTFYWFKWLFLTGVCIGCVCSVKLVGLFI 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,942
Number of Sequences: 5004
Number of extensions: 60994
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)