Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_B04
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 41 0.001
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992... 40 0.003
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 33 0.37
07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609 31 1.5
07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888... 30 2.6
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 29 3.5
09_06_0286 + 22040904-22040936,22041342-22041680,22041948-220421... 29 4.6
02_02_0469 + 10691648-10691692,10691755-10691907,10692043-106920... 29 4.6
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 29 6.1
06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413 28 8.0
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210... 28 8.0
02_01_0088 - 627825-628984,629339-629509,629612-630416 28 8.0
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 28 8.0
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/86 (31%), Positives = 36/86 (41%)
Frame = +2
Query: 575 TTGDWFVMFYGAACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHVGKLPA 754
+ G V F+ C CQ+L +WE LK VA +DA A A+ + + P
Sbjct: 46 SNGVVLVEFFAPWCGHCQQLTPIWEKAAGVLKGVATVAALDAD-AHKELAQEYGIRGFPT 104
Query: 755 FLLFRLGKVYRYDLPKNDVKSFVAFA 832
+F GK DVK V FA
Sbjct: 105 IKVFVPGKPPVDYQGARDVKPIVEFA 130
Score = 35.1 bits (77), Expect = 0.070
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +2
Query: 488 GFFEKNQTPAVKELTDKIFEHLTQAATGATTGDWFVMFYGAACVECQRLHAVWESVGATL 667
G EK + A EL + F+ L + W V F+ C C++L W+ L
Sbjct: 157 GSSEKTEPSASIELNSQNFDKLVTKSKDL----WIVEFFAPWCGHCKKLAPEWKKAAKNL 212
Query: 668 KSRINVARID 697
K ++ + +D
Sbjct: 213 KGQVKLGHVD 222
>03_02_0621 -
9923163-9923245,9924163-9924338,9924437-9924495,
9924952-9924984,9925060-9925185
Length = 158
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +2
Query: 587 WFVMFYGAACVECQRLHAVWESVGATLK--SRINVARIDASLAGVNTAKRFHVGKLPAFL 760
WFV F C C+ L +WE +G ++ I + ++D ++ + + P F
Sbjct: 61 WFVKFCVPWCKHCKNLGTLWEDLGKVMEGADEIEIGQVDCGVS-KPVCSKVDIHSYPTFK 119
Query: 761 LFRLG-KVYRYDLPKN--DVKSFVA 826
+F G +V +Y P+N +K+FV+
Sbjct: 120 VFYEGEEVAKYKGPRNVESLKNFVS 144
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 32.7 bits (71), Expect = 0.37
Identities = 40/175 (22%), Positives = 62/175 (35%), Gaps = 12/175 (6%)
Frame = +2
Query: 287 CETCKKLEQHVESLQEDFKKHLNAMSVKT-VNSH--LARLYNPSKEPALIFYRHG--VAL 451
C CKKL E L FKK + + K + H + Y S P + ++ G
Sbjct: 59 CGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPK 118
Query: 452 LYSGEADENEIYGFFEKNQTPAVK-ELTDKIFEHLTQAATGAT----TGDWFVMFYGAAC 616
Y G+ + + VK LT + T D V FY C
Sbjct: 119 KYEGQRTAEALAEYVNSEAATNVKIAAVPSSVVVLTPETFDSVVLDETKDVLVEFYAPWC 178
Query: 617 VECQRLHAVWESVGATLK--SRINVARIDASLAGVNTAKRFHVGKLPAFLLFRLG 775
C+ L ++E + + K + +A +DA A+++ V P F G
Sbjct: 179 GHCKHLAPIYEKLASVYKQDEGVVIANLDAD-KHTALAEKYGVSGFPTLKFFPKG 232
>07_03_0550 - 19356710-19357763,19358941-19359256,19359552-19359609
Length = 475
Score = 30.7 bits (66), Expect = 1.5
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Frame = +2
Query: 458 SGEADENEIYGFFEKNQTPAVKELTDKIFEHLTQAATGATTGDWFVMFYGAACVECQRLH 637
+G A+ N G + ++ V LT E+L + + A W V+ Y C CQ +
Sbjct: 343 AGGANGNGSAGAPDIFESSGVVSLTRAGVENLLRLESRAEP--WLVVLYAPWCPFCQAME 400
Query: 638 AVWESV-----GATLKSRINVARIDASLAGVNTAKRFHVGKLPAFLLF--RLGKVYRYDL 796
A + + GA ++ R D + + P LLF R + +Y
Sbjct: 401 ASYLELAERLGGAGGGVKVGKFRADGEQKAF-AQQELQLQSFPTILLFPSRTARPIKYPS 459
Query: 797 PKNDVKSFVAF 829
K DV S +AF
Sbjct: 460 EKRDVDSLLAF 470
>07_03_0651 +
20287661-20287701,20288034-20288124,20288737-20288831,
20289433-20289523,20290066-20290250,20290590-20290647,
20290812-20290852,20290935-20291009,20292298-20292354,
20292480-20292546,20292754-20292900,20292986-20293210,
20293332-20293493,20293570-20293647,20293735-20293812
Length = 496
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +2
Query: 593 VMFYGAACVECQRLHAVWESVGATLK--------SRINVARIDASLAGVNTAKRFHVGKL 748
V FY C RL WE ++ RI +A++D + ++ +R H+
Sbjct: 174 VNFYAPWCYWSNRLKPSWEKTAKIMRERYDPEMDGRIILAKVDCT-EEIDLCRRHHIQGY 232
Query: 749 PAFLLFRLGKVYRYDLPKNDVKSF 820
P+ +FR G + + +D +S+
Sbjct: 233 PSIRIFRKGSDLKENQGHHDHESY 256
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 29.5 bits (63), Expect = 3.5
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Frame = +2
Query: 287 CETCKKLEQHVESLQEDFKKHLNAMSVKTV------NSHLARLYNPSKEPAL-IFYRHGV 445
C CKKL E ++ KH + + V N LA Y P L IF G
Sbjct: 69 CGHCKKLAPEYEKAAQELSKHDPPIVLAKVDANDEKNKPLATKYEIQGFPTLKIFRNQGK 128
Query: 446 ALL-YSGEADENEIYGFFEKNQTPAVKEL 529
+ Y G + I + +K PA KE+
Sbjct: 129 NIQEYKGPREAEGIVEYLKKQVGPASKEI 157
>09_06_0286 +
22040904-22040936,22041342-22041680,22041948-22042190,
22042285-22042434,22043659-22044045
Length = 383
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/61 (22%), Positives = 34/61 (55%)
Frame = +2
Query: 590 FVMFYGAACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHVGKLPAFLLFR 769
+++ A+ ++C +L A + + + R+N + +L+ V AK++ GK+P+ + F
Sbjct: 308 YLIIENASSLQCLKLDAGYGFDTSGMCKRMNKLDVLHALSAVEVAKKYIEGKVPSSVKFN 367
Query: 770 L 772
+
Sbjct: 368 I 368
>02_02_0469 + 10691648-10691692,10691755-10691907,10692043-10692093,
10692162-10692224,10692327-10693031,10693128-10693223,
10693307-10695547
Length = 1117
Score = 29.1 bits (62), Expect = 4.6
Identities = 32/152 (21%), Positives = 58/152 (38%)
Frame = +2
Query: 377 NSHLARLYNPSKEPALIFYRHGVALLYSGEADENEIYGFFEKNQTPAVKELTDKIFEHLT 556
N HL ++ K A +++R + I F+ N P K+ DK
Sbjct: 820 NQHLQLMWQTRKSWAPVYFREDLYPFIDSVGSNEGINSLFKGNMLP--KDTIDKFIGQFK 877
Query: 557 QAATGATTGDWFVMFYGAACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFH 736
+ F A ++ + + E A + +R ++ L +TA F+
Sbjct: 878 EIQENIAKVHEEDRFQSGADLKYISMQPI-EQHAAHIYTREIFLKVQEELLH-STA--FN 933
Query: 737 VGKLPAFLLFRLGKVYRYDLPKNDVKSFVAFA 832
V ++ ++RL KV+ Y+ P+ D F A
Sbjct: 934 VQEIQIGTVYRLEKVFNYENPEFDRNYFEVLA 965
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 626 QRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHVGKLPAF 757
+R +W S L++R+N RI +A + + R H G + F
Sbjct: 58 RRWRPLWRSAPLNLEARVNGGRIAKDVATIRSTLRTHKGPVCRF 101
>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
Length = 677
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +1
Query: 640 CLGKCWSNIKEQNK--CCSH*CKFSWCQH 720
C+ K +SN +E+++ CC++ CK S +H
Sbjct: 152 CIHKLFSNARERSQFLCCAYPCKASHIEH 180
>02_04_0182 +
20719782-20720033,20720502-20720605,20720693-20721066,
20721302-20721609,20721853-20722092
Length = 425
Score = 28.3 bits (60), Expect = 8.0
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Frame = +2
Query: 461 GEADENEIYGFFEKNQTPAVKELTDKIFEHLTQAATGATTGDWFVMFYGAACVECQRLHA 640
GEA+E F+ + V EL D F+ +AA G FV FY C C+RL
Sbjct: 35 GEAEE------FQIPRDGRVLELDDGNFDAAVRAA-----GLLFVDFYAPWCGHCKRLAP 83
Query: 641 VWES---VGATLKSRINVARIDASLAGVNTAKRFHVGKLPAFLLFRLGKVYRY 790
+ V A L + I VA+++A ++ V P +LF G Y
Sbjct: 84 QLDEAAPVLAGLSTPIVVAKVNAD-KYKKLGSKYGVDGFPTLMLFDHGTPTEY 135
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 769 AKQKECWQF-SNMKSFSSVDTS*TCINASNIYSAL*CCSNTF 647
A ++ C Q N S++ V T+ +CIN+ N L C+N F
Sbjct: 216 AGRESCAQAPKNRTSYACVSTNSSCINSPNATGYLCACNNGF 257
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 28.3 bits (60), Expect = 8.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 667 KEQNKCCSH*CKFSWCQH 720
++QN C + CK WC+H
Sbjct: 196 RQQNNACHYLCKKRWCRH 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,232,634
Number of Sequences: 37544
Number of extensions: 329691
Number of successful extensions: 786
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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