Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B04
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                 46   3e-05
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 32   0.66 
SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0)                        31   1.5  
SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)           30   2.7  
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)                  29   6.2  

>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 29/86 (33%), Positives = 38/86 (44%)
 Frame = +2

Query: 518 VKELTDKIFEHLTQAATGATTGDWFVMFYGAACVECQRLHAVWESVGATLKSRINVARID 697
           V ELTD  FE     +       W V F+   C  CQRL   W      LK ++ V  +D
Sbjct: 81  VVELTDTNFEKEVLNSKDL----WLVEFFAPWCGHCQRLAPEWAKAATELKGKVKVGALD 136

Query: 698 ASLAGVNTAKRFHVGKLPAFLLFRLG 775
           A++  V TA R+ V   P   +F  G
Sbjct: 137 ATVHTV-TASRYQVQGYPTIKVFAAG 161


>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +2

Query: 287 CETCKKLEQHVESLQEDFKKH----LNAMSVKTVNSHLARLYNPSKEPALIFYRHGVALL 454
           C  CK+L    E   ++ +KH      A+   T+ S LA+ Y     P L  +R G A  
Sbjct: 205 CGHCKQLAPEYEKAAQELQKHDPPIPLAIVDATIESELAQKYEVQGYPTLKVFRKGKATE 264

Query: 455 YSGEADENEIYGFFEKNQTPAVKELT 532
           Y G+ D+  I  +      P+ + L+
Sbjct: 265 YKGQRDQYGIASYMRSQVGPSSRILS 290



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 593 VMFYGAACVECQRLHAVWESVGATLKSR---INVARIDASLAGVNTAKRFHVGKLPAFLL 763
           V FY   C  C+ L   +      +K     +  A++DA++A  + A+RF V   P   +
Sbjct: 83  VEFYAPWCGHCKSLAPEYAKAAKKMKLNDPPVPFAKMDATVAS-DIAQRFDVSGYPTLKI 141

Query: 764 FRLGKVYRYDLPKND 808
           FR G  Y Y+ P+ +
Sbjct: 142 FRKGTPYEYEGPREE 156


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 590 FVMFYGAACVECQRLHAVWESVGATLKSR--INVARIDASLAGVNTAK 727
           FV FY   C  C++L  +W+ +G   K    I VA++D++   V   K
Sbjct: 406 FVEFYAPWCGHCKQLAPIWDQLGEKYKDHADIVVAKMDSTANEVEGVK 453


>SB_4909| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1307

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 808 IIFWQVISVHFAKAKQKECWQFSNMKSFSSVDTS*TCINASNIYSAL 668
           I++W +  VH  +   KE  ++  +  + S  TS TC+  SNIY  +
Sbjct: 698 IVYWMMAEVHRIRLNHKEALEYFLLAEYYSSKTS-TCL-LSNIYQGI 742


>SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 808 IIFWQVISVHFAKAKQKECWQFSNMKSFSSVDTS*TCINASNIYSAL 668
           I++W +  VHF +   KE  Q+  +  + S  TS   +  SNIY  +
Sbjct: 709 ILYWMMAEVHFIRLNYKEALQYFLLAKYYSPKTSTRLL--SNIYQGI 753


>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 572 ATTGDWFVMFYGAACVECQRLHAVWESVGATLKSRINVARID 697
           A+   W V FY   C  C R    +E +   LK ++  A+++
Sbjct: 449 ASEDAWVVDFYAPWCGPCMRFAPKYEQLAKMLKGKVRAAKVN 490


>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
          Length = 186

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 590 FVMFYGAACVECQRLHAVWESVGATLKSRINV 685
           FV FY   C+ C +L  +WE +    K   ++
Sbjct: 110 FVKFYAPWCIHCIKLAPIWERLAEDFKDNADI 141


>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
          Length = 227

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 299 KKLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYRH 439
           K+L+    SL++  K+     S+ T  SH + L NPSK+  L F ++
Sbjct: 139 KRLKHSPLSLEKPRKQAAFRASINTNTSHGSSLTNPSKKSKLSFQKN 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,460,828
Number of Sequences: 59808
Number of extensions: 426473
Number of successful extensions: 1060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)