Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B04
         (838 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   2.9  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   6.6  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   8.7  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    23   8.7  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 500 SQKSHRFHFHQPHH 459
           SQ  H  H H PHH
Sbjct: 181 SQHHHHHHHHHPHH 194


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 278 KQNCETCKKLEQHVESLQE 334
           + NC T + LEQ  + LQE
Sbjct: 268 ESNCATAQTLEQEAKELQE 286


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
            transcriptase protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 551  NAQIFYLLALLQLVFDSSQKSHRFHFHQPHHCIK 450
            NAQ  ++  LL    DSS   HR   + P   ++
Sbjct: 962  NAQCSFIAGLLNGSIDSSPLLHRVDIYAPSRTLR 995


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/43 (23%), Positives = 16/43 (37%)
 Frame = +1

Query: 571 CNNRRLVCHVLWGSLC*MPKATCCLGKCWSNIKEQNKCCSH*C 699
           C+     C+ LW            +  CW +  +Q  C S+ C
Sbjct: 89  CSRTAPFCYTLWTFDIVKNVTRVVVQGCWGSNDDQESCSSNEC 131


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 782,860
Number of Sequences: 2352
Number of extensions: 14429
Number of successful extensions: 255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88478514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)