Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B04
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   8.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   8.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 678 ILLFNVAPTLSQTACSLWHSTQAAP*NMTNQS 583
           IL  NV   +  T C  +H+  A   N  NQ+
Sbjct: 405 ILGANVDDLMRNTRCGRYHNQNAGNQNADNQN 436


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +2

Query: 287 CETCKKLEQHVESLQEDFKKHLNAMSVKTVNSHLARLYNPSKEPALIFYRH 439
           CE C     +   L    K H N    +  N   A  Y  S +  L  Y H
Sbjct: 19  CEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSLKLHLRKYSH 69


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 628 KATCCLGKCWSNIKEQNK 681
           K  CC G C   +KE +K
Sbjct: 455 KTFCCKGYCMDLLKELSK 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,539
Number of Sequences: 438
Number of extensions: 4077
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)