Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B02
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   3.3  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.4  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 238 LIKLLHGELGGHFSKTSCLLRSNFIQLYMYCIHIFV*T-KNKNI 366
           L++LL  +LG  F +    LRS   ++ +Y   ++  T K+KN+
Sbjct: 851 LVELLVADLGDDFKEPHLFLRSRLNEITVYKAFLYSNTDKHKNL 894


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 247 ILSNVGRQPNLQLTVCLFSTVRL*CNAAYYCIKTSINYNQNSMYTL 110
           ILS + R+ +L++  CL+ T  L   +  Y I  S+  N++  ++L
Sbjct: 145 ILSRIRRKLDLRIITCLWITYFL-SRSVTYSISLSLTMNKHQGHSL 189


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 154 IKTSINYNQNSMYTLQAIM*ILTKQHNTL 68
           +KTSI +    +  LQ  + I+T Q NTL
Sbjct: 141 LKTSITHLDEEIQILQEKLAIVTNQRNTL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,490
Number of Sequences: 5004
Number of extensions: 25798
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)