Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_B02
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = +3

Query: 72  VLCCFVNIY---IIAWSVYIL 125
           VL C+ NIY   I+AW+++ L
Sbjct: 106 VLSCWTNIYYIIILAWALFYL 126


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = +3

Query: 72  VLCCFVNIY---IIAWSVYIL 125
           VL C+ NIY   I+AW+++ L
Sbjct: 159 VLSCWTNIYYIIILAWALFYL 179


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 171 LHYNLTVENKQTVSCKLGCLPTFD 242
           + YN   EN QT + K+G  P++D
Sbjct: 535 IQYNTRAENHQTGTAKMG--PSYD 556


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 162 YAALHYNLTVENKQTVSCKLGCLPTFDKITTRRTR 266
           Y A  ++  + N Q+++ +  C P F    + +TR
Sbjct: 789 YYAASFHTDIGNSQSLAHQDQCCPGFTMTKSGKTR 823


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,987
Number of Sequences: 438
Number of extensions: 1649
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)