Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A24
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    29   0.69 
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    27   3.7  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    27   4.9  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   8.5  

>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = +3

Query: 396 VINSHYKKQHDMSKIDITIQVDPYVNKYDCRGAVSLSSSMQSNVPSPFTGNHTHLNMPGS 575
           V +SHY   H M    +  + D    K D +  V+LS S++S V    T   TH +M   
Sbjct: 147 VDSSHYPIFHQMEGALVWNRNDTAKMKNDLK-KVALSPSLKSMVDDETTALETHNDMQDI 205

Query: 576 QWGQGHKYLSDHL 614
              +  K++S HL
Sbjct: 206 YSLEETKFVSQHL 218


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 553 VWFPVKGLGTL-LCMDEDRLTAPRQSYLLTYGSTCIVISI 437
           ++F +  +GTL + ++  +LT  + S L+ YG+ C++I +
Sbjct: 228 IFFGMPAIGTLKISLERLQLTFMQVSQLVGYGTKCLIILV 267


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 809 ITLTATPFIVRHLRNIGILKRGINAGGGE 895
           I +T  P    HL  IG+ ++G++A G E
Sbjct: 246 IVITEYPLRETHLEEIGVFEKGMDAAGFE 274


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = +1

Query: 820 CNTFHRSTLKKYWNFKTWYKCWWW 891
           C  F      KY N + W   W W
Sbjct: 292 CKNFSNDLSDKYQNIRLWVSVWQW 315


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 754 DFCYSLYSPQNFRSIPDSHNFDC 822
           D+C+ L +P    +  +SH++DC
Sbjct: 112 DYCFLLSTPVECSASTNSHSYDC 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,830,487
Number of Sequences: 5004
Number of extensions: 87212
Number of successful extensions: 211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)