Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A17
         (902 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   3.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   3.3  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   4.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   4.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   4.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   4.3  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   4.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   4.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   4.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   4.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   4.3  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   4.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   4.3  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 647 INESE*FVHCLISFFTAYLQRLVIIIYKSCRVTNQS 754
           I +++ + +   +FF  +L   V+IIY  C  T +S
Sbjct: 107 IKKTKRYCYYYYAFFGVHLAYGVVIIYSICVQTEKS 142


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 71  LAGNNAPANKVAQLFKRSRTYINRTT 148
           LAG ++P+N+  +   + RT+   TT
Sbjct: 259 LAGTSSPSNRFTRHLIQRRTHTRHTT 284


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = -2

Query: 478 YLCNKIELLLIIWSTLIYSYRIHHSNLK*HYIHLF*LQCNVC*NSELSRQCFN 320
           +LC     + I+W  L+   +++H  ++ +Y  L+  +  V  NS ++   +N
Sbjct: 300 FLCLIPFRVFILWIILVPEEQVYHLEIEKYYNILYFCRIMVYLNSAINPILYN 352


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  PTDLPEIFSPATMHPPIKSPSFSN 119
           P DL    +P    PP+ +PS SN
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSN 136


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  PTDLPEIFSPATMHPPIKSPSFSN 119
           P DL    +P    PP+ +PS SN
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSN 136


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  PTDLPEIFSPATMHPPIKSPSFSN 119
           P DL    +P    PP+ +PS SN
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSN 136


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 646 YK*VGVVCTLSHFVFYCILAKV 711
           Y  +G+V T+++FV + IL  V
Sbjct: 34  YSKIGIVQTVAYFVIFIILTIV 55


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  PTDLPEIFSPATMHPPIKSPSFSN 119
           P DL    +P    PP+ +PS SN
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSN 136


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  PTDLPEIFSPATMHPPIKSPSFSN 119
           P DL    +P    PP+ +PS SN
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSN 136


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  PTDLPEIFSPATMHPPIKSPSFSN 119
           P DL    +P    PP+ +PS SN
Sbjct: 69  PQDLSTNGAPPRSTPPLSTPSNSN 92


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  PTDLPEIFSPATMHPPIKSPSFSN 119
           P DL    +P    PP+ +PS SN
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSN 136


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  PTDLPEIFSPATMHPPIKSPSFSN 119
           P DL    +P    PP+ +PS SN
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSN 136


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  PTDLPEIFSPATMHPPIKSPSFSN 119
           P DL    +P    PP+ +PS SN
Sbjct: 113 PQDLSTNGAPPRSTPPLSTPSNSN 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,572
Number of Sequences: 336
Number of extensions: 3870
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)