Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A17
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   1.6  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    28   2.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   4.8  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    26   8.4  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 24   QIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTSTGLPFLEDMND 170
            Q+ I E   TD P +FSP      I + S  +  E  S  +PF E+  D
Sbjct: 1396 QVSIDEATQTDFPLVFSPERSSIDINASSMRS--EKASFEIPFPEEQID 1442


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 3   NDRAKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPSFSNDREPTSTGLPFL 155
           N+ +  P + +Y          F P   H P+ S    +  +PT+TGLP L
Sbjct: 252 NEHSAFPGLDVYHDDSVSAGAAFIP---HNPMDSIDHLDVNDPTATGLPVL 299


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 48   PTDLPEIFSPATMHPPIKSPSFSNDREPTSTGLP 149
            P+ +P +  P+   PP+  PS +    P  +G P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
 Frame = +3

Query: 3   NDRAKIPQIQIYEVRPTDLPEIFSPATMHPPIKSPS--------FSNDREPTSTGLPFL 155
           N    +P +      P+ +P +F P   HP   +PS        F N   P    +PFL
Sbjct: 116 NFNNSLPAVGKTNTFPSQVPNMFGPPLYHPAATAPSEFMPSIPGFGNLPNPAMPPIPFL 174


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 93  PIKSPSFSNDREPTSTGLPFL 155
           P+K P F   R P++T LP L
Sbjct: 52  PVKVPDFVRPRPPSATSLPAL 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,991
Number of Sequences: 5004
Number of extensions: 62007
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)