Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A17
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.      29   4.5  
AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.      29   4.5  
AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1 suppres...    29   4.5  

>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 369 YNVMFVKIQSFPDNVLIPIIYNNMSKVKE*P 277
           YN + +KI  FP ++L PI+ +N+  + + P
Sbjct: 220 YNTLIMKIIGFPTDMLFPIVDSNLKDMNKLP 250


>AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 280 LFFNFRHXXXXXXXXXXVWKALNFNKHYIVVKISVY-SAILD-YCDVCDSCISMWT 441
           LF N+ +          V + L F  ++++VK+ VY +A LD Y D   +C+S+ T
Sbjct: 93  LFLNYMYSGTVIIDRSSVSELLRFANNFLIVKLKVYCAAYLDRYLDAA-NCLSIRT 147


>AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 280 LFFNFRHXXXXXXXXXXVWKALNFNKHYIVVKISVY-SAILD-YCDVCDSCISMWT 441
           LF N+ +          V + L F  ++++VK+ VY +A LD Y D   +C+S+ T
Sbjct: 93  LFLNYMYSGTVIIDRSSVSELLRFANNFLIVKLKVYCAAYLDRYLDAA-NCLSIRT 147


>AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1
           suppressor/dio uptake defective/raf enhancer protein 1
           protein.
          Length = 909

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 280 LFFNFRHXXXXXXXXXXVWKALNFNKHYIVVKISVY-SAILD-YCDVCDSCISMWT 441
           LF N+ +          V + L F  ++++VK+ VY +A LD Y D   +C+S+ T
Sbjct: 93  LFLNYMYSGTVIIDRSSVSELLRFANNFLIVKLKVYCAAYLDRYLDAA-NCLSIRT 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,595,679
Number of Sequences: 27780
Number of extensions: 331010
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)