Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A14
         (922 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060...    30   3.0  
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931...    29   5.2  
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148...    29   6.9  

>11_06_0562 +
           25003246-25003746,25004975-25005214,25005576-25006097,
           25006184-25007248,25007350-25007656,25007761-25008001,
           25008104-25008302,25008771-25008852,25008959-25009209,
           25010061-25010219,25010220-25010603
          Length = 1316

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/52 (21%), Positives = 26/52 (50%)
 Frame = +1

Query: 103 PTPPLEIDLLKSVCQRYLGNEIWCNFRIEKDNRVSSVLKDLSKLVKCYNTAI 258
           PT    +D    +  +++  E W N ++   N  SS   D++ +++C ++ +
Sbjct: 252 PTHFKGVDEYLGLYSQFILEETWSNLKVSLQNLTSSAYYDINNMLRCESSGV 303


>10_06_0154 -
           11291630-11292106,11292192-11292457,11293027-11293131,
           11293210-11293234,11293349-11293465,11293528-11294041,
           11295524-11295578,11295980-11296060,11296129-11296219,
           11296321-11296417,11297465-11297529,11297950-11298108,
           11298208-11298455,11300667-11300835
          Length = 822

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 296 LTIHHSPWNSRSIWMTILHTQNLMNSSQAVSKVMKTIW 409
           L +HH+   S S ++  +  QN++ +SQAVS   K+I+
Sbjct: 165 LGVHHNFLGSYSQYLAEIQRQNMVMNSQAVSSDKKSIF 202


>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
            35714942-35715135,35715237-35716786,35716946-35717049,
            35717258-35717399,35717692-35717910
          Length = 1535

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 628  NYNLIDMLNVIVYEKINSLKNFGNRYA---IYKPSLLEEFRTLNWLLENKLLFEIKHKAI 798
            N+NL D  N ++++ +NS +N+GN  +   I + +++E        ++  LL E+    +
Sbjct: 883  NFNLDDK-NTMMFQSVNSTENYGNNRSVEFIPETNMIETLEVAGESIDG-LLHEVSSNVV 940

Query: 799  N 801
            N
Sbjct: 941  N 941


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,817,545
Number of Sequences: 37544
Number of extensions: 408660
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)