Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_A14
(922 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41014-3|AAK32948.1| 519|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z29094-7|CAA82342.2| 453|Caenorhabditis elegans Hypothetical pr... 30 2.0
U50301-9|AAB37047.1| 305|Caenorhabditis elegans Hypothetical pr... 30 2.7
AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical ... 30 2.7
Z92797-2|CAB07236.1| 425|Caenorhabditis elegans Hypothetical pr... 29 6.2
Z81587-2|CAB04702.2| 339|Caenorhabditis elegans Hypothetical pr... 29 6.2
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 29 6.2
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho... 29 6.2
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho... 29 6.2
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 29 6.2
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 29 6.2
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr... 29 6.2
AL032639-1|CAA21638.1| 373|Caenorhabditis elegans Hypothetical ... 29 6.2
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh... 29 6.2
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p... 29 6.2
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical... 28 8.2
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 28 8.2
AL110479-3|CAB60312.2| 330|Caenorhabditis elegans Hypothetical ... 28 8.2
>U41014-3|AAK32948.1| 519|Caenorhabditis elegans Hypothetical
protein C06G1.1 protein.
Length = 519
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = +1
Query: 538 DEIVC-----KVITVLPNELTDLNMSCENFKKYFMNYNLIDMLNVIVYEKINSLKNFGNR 702
+++VC +++ VL N + + +S F++YF+NY L+ V + +LK+ GN
Sbjct: 197 EQVVCPSFHAELVPVLSNRIMNTPLSASLFEQYFINYALLG--PVEFSSQAITLKHRGNS 254
Query: 703 YAIYKP--SLLEEFR 741
+ I + + L +FR
Sbjct: 255 FGILRQGRTRLNDFR 269
>Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical
protein K09C8.4 protein.
Length = 633
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 614 LKFSHDIFKSVSSLGRTVITLHTISSE 534
LKF DI K+V+ L RT IT+H + E
Sbjct: 388 LKFQLDIAKAVTELNRTDITIHLVFEE 414
>Z29094-7|CAA82342.2| 453|Caenorhabditis elegans Hypothetical
protein C07A9.8 protein.
Length = 453
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 541 EIVCKVITVLPNELTDLNMSCENFKKYFMNYN-LIDMLNVIVYEK 672
E V + +LP+EL N ++KY++++N +++LNV EK
Sbjct: 198 EAVAQAGIMLPHELEKFNSIKSRYQKYWVSFNWALELLNVAKTEK 242
>U50301-9|AAB37047.1| 305|Caenorhabditis elegans Hypothetical
protein F20D6.2 protein.
Length = 305
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 469 VDVENMQYQIRTYCKQIGWLENSDEIVCKVITVLPNELTDLNMSCENF-KKYFMNYNLI 642
+D+E+ +Y + + ++ G LE++ IVC++ + + + + + NF +K F+ + I
Sbjct: 194 IDIEHAEYPVFPFIEEKGQLEDNGIIVCQINIEIHSPIDEDRETFANFLRKNFVTHQWI 252
>AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical
protein Y40D12A.2 protein.
Length = 512
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 301 YPSFALEFKKYLDDNSPYPKPYEFISSSVKSDENNMVIKHLMSDLKLAEPTFMFNP 468
Y + L F YL+ N PYP P+E I K+ N + K ++ + + + + + P
Sbjct: 264 YDPYFLYFACYLNPNLPYP-PHEEIRKLQKNVLRNNLYKKIIGESPVLKNKYFYPP 318
>Z92797-2|CAB07236.1| 425|Caenorhabditis elegans Hypothetical
protein H25P06.4 protein.
Length = 425
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 247 NTAIDKLTEVITNEDNFNYPSFALEFKKYLDDNSPYPKPYEF 372
+T D E + + F++ +F E ++YL + PYEF
Sbjct: 277 STISDNSCEPVAKKPEFDFKTFMQELERYLACDDEVTPPYEF 318
>Z81587-2|CAB04702.2| 339|Caenorhabditis elegans Hypothetical
protein T06G6.2 protein.
Length = 339
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -2
Query: 561 YYFAHNFIGIFEPTNLFAVSSNLILHIFNIHRIEHKRWLC*FQIRH*MFYDHIVF 397
YYFA I N+F+ S+ LIL + ++ I H+ + +IR Y IVF
Sbjct: 43 YYFARLAIRTLWKNNIFSNSTRLILLVCLLNSIIHQTTMLEIRIR--QIYRSIVF 95
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 28.7 bits (61), Expect = 6.2
Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Frame = +1
Query: 181 RIEKDNRVSSVLKDLSKLVKCYNTAIDKLTEVITNEDNFNYPSFALEFKKYLDDNSPYPK 360
RI+ N+V +++++L L + + + +L ++ F E + D
Sbjct: 209 RIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPADTREFFKNELALAIRD---IKD 265
Query: 361 PYEFISSSVKSDENN---MVIKHLMSDLKLAEPTFMFNPVDVENMQYQIRTYCKQIGWLE 531
Y+ I+ K D + + + + A + +V+ M+ I ++G LE
Sbjct: 266 EYDIIAKQGKQDMESWYKLKVSEVQGSANRANMESTYQRDEVKRMRDNIGDLRGKLGDLE 325
Query: 532 NSDEIVCKVITVLPNELTD 588
N + ++ K + L +LTD
Sbjct: 326 NKNSLLEKEVQNLNYQLTD 344
>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
6-phosphate synthaseprotein 1, isoform b protein.
Length = 1294
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +1
Query: 52 LNSCTKNALKWLAKHYPPTPPLEIDLLKSVCQRYLGNEIWCNF-RIEKDNRVS----SVL 216
L++ N + L +H T L + L+K C E++C R EK ++ +V
Sbjct: 334 LSNLGVNMQEELKEHSTSTNSLGLPLIKQAC----AGEVFCVLERNEKKEELTPKQQAVE 389
Query: 217 KDLSKL--VKCYNTAIDKLTEVITNEDNFN 300
D+S L + YN +L V+ N+D++N
Sbjct: 390 SDMSLLSVLNTYNKHSYQLNPVVVNQDDYN 419
>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
6-phosphate synthaseprotein 1, isoform a protein.
Length = 1331
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +1
Query: 52 LNSCTKNALKWLAKHYPPTPPLEIDLLKSVCQRYLGNEIWCNF-RIEKDNRVS----SVL 216
L++ N + L +H T L + L+K C E++C R EK ++ +V
Sbjct: 371 LSNLGVNMQEELKEHSTSTNSLGLPLIKQAC----AGEVFCVLERNEKKEELTPKQQAVE 426
Query: 217 KDLSKL--VKCYNTAIDKLTEVITNEDNFN 300
D+S L + YN +L V+ N+D++N
Sbjct: 427 SDMSLLSVLNTYNKHSYQLNPVVVNQDDYN 456
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 28.7 bits (61), Expect = 6.2
Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Frame = +1
Query: 181 RIEKDNRVSSVLKDLSKLVKCYNTAIDKLTEVITNEDNFNYPSFALEFKKYLDDNSPYPK 360
RI+ N+V +++++L L + + + +L ++ F E + D
Sbjct: 209 RIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPADTREFFKNELALAIRD---IKD 265
Query: 361 PYEFISSSVKSDENN---MVIKHLMSDLKLAEPTFMFNPVDVENMQYQIRTYCKQIGWLE 531
Y+ I+ K D + + + + A + +V+ M+ I ++G LE
Sbjct: 266 EYDIIAKQGKQDMESWYKLKVSEVQGSANRANMESTYQRDEVKRMRDNIGDLRGKLGDLE 325
Query: 532 NSDEIVCKVITVLPNELTD 588
N + ++ K + L +LTD
Sbjct: 326 NKNSLLEKEVQNLNYQLTD 344
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 28.7 bits (61), Expect = 6.2
Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Frame = +1
Query: 181 RIEKDNRVSSVLKDLSKLVKCYNTAIDKLTEVITNEDNFNYPSFALEFKKYLDDNSPYPK 360
RI+ N+V +++++L L + + + +L ++ F E + D
Sbjct: 240 RIDFQNQVQTLMEELEFLRRVHEQEVKELQALLAQAPADTREFFKNELALAIRD---IKD 296
Query: 361 PYEFISSSVKSDENN---MVIKHLMSDLKLAEPTFMFNPVDVENMQYQIRTYCKQIGWLE 531
Y+ I+ K D + + + + A + +V+ M+ I ++G LE
Sbjct: 297 EYDIIAKQGKQDMESWYKLKVSEVQGSANRANMESTYQRDEVKRMRDNIGDLRGKLGDLE 356
Query: 532 NSDEIVCKVITVLPNELTD 588
N + ++ K + L +LTD
Sbjct: 357 NKNSLLEKEVQNLNYQLTD 375
>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
protein F54F2.1 protein.
Length = 1226
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 289 DNFNYPSFALEFKKYLDDNSPYPKPYEFISSSVKSDEN 402
D N F L F LDD+SP P+ Y F+ VKSD +
Sbjct: 522 DTPNDLEFDLRFN--LDDHSPEPRAY-FLQKDVKSDRS 556
>AL032639-1|CAA21638.1| 373|Caenorhabditis elegans Hypothetical
protein F18A11.5 protein.
Length = 373
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +1
Query: 67 KNALKWLAKH---YPPTPPLEIDLLKSVCQRYLGNEIWCNFRIEKDNRVSSVLKDLSKLV 237
K + W +H P T E+D +KS+ + L + IW + ++ +L +
Sbjct: 280 KMVVTWCIRHRVEVPSTSTWEVDYVKSLDREELKDAIWAAKYLRMPILINITSSEL--FL 337
Query: 238 KCYNTAIDKLTEV 276
+ NT +++L EV
Sbjct: 338 RAENTPVERLDEV 350
>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative
trehalose 6-phosphatesynthase protein.
Length = 1331
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +1
Query: 52 LNSCTKNALKWLAKHYPPTPPLEIDLLKSVCQRYLGNEIWCNF-RIEKDNRVS----SVL 216
L++ N + L +H T L + L+K C E++C R EK ++ +V
Sbjct: 371 LSNLGVNMQEELKEHSTSTNSLGLPLIKQAC----AGEVFCVLERNEKKEELTPKQQAVE 426
Query: 217 KDLSKL--VKCYNTAIDKLTEVITNEDNFN 300
D+S L + YN +L V+ N+D++N
Sbjct: 427 SDMSLLSVLNTYNKHSYQLNPVVVNQDDYN 456
>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
trehalose-6-phosphate synthase protein.
Length = 1331
Score = 28.7 bits (61), Expect = 6.2
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +1
Query: 52 LNSCTKNALKWLAKHYPPTPPLEIDLLKSVCQRYLGNEIWCNF-RIEKDNRVS----SVL 216
L++ N + L +H T L + L+K C E++C R EK ++ +V
Sbjct: 371 LSNLGVNMQEELKEHSTSTNSLGLPLIKQAC----AGEVFCVLERNEKKEELTPKQQAVE 426
Query: 217 KDLSKL--VKCYNTAIDKLTEVITNEDNFN 300
D+S L + YN +L V+ N+D++N
Sbjct: 427 SDMSLLSVLNTYNKHSYQLNPVVVNQDDYN 456
>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform b
protein.
Length = 1250
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 322 FKKYLDDNSPYPKPYE 369
FKKYLDD + PKP++
Sbjct: 779 FKKYLDDTAGLPKPFK 794
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 322 FKKYLDDNSPYPKPYE 369
FKKYLDD + PKP++
Sbjct: 779 FKKYLDDTAGLPKPFK 794
>AL110479-3|CAB60312.2| 330|Caenorhabditis elegans Hypothetical
protein Y105C5B.4 protein.
Length = 330
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 241 CYNTAIDKLTEVITNEDNFNYPSFALEFKKYLDDNSPYPKPYEFISSSV 387
C +++ LT ++TN +P F F Y+ YP Y +I+ S+
Sbjct: 60 CISSSFIDLTTLLTNYFGAMFPKFGYFFNFYMGLGQIYPHIYLYIAWSM 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,718,349
Number of Sequences: 27780
Number of extensions: 422016
Number of successful extensions: 1186
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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