Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A11
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...   140   2e-34
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    34   0.033
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    30   0.40 
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    29   0.93 
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   1.2  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   1.2  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    28   2.1  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    27   2.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   3.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   5.0  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   6.6  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    26   6.6  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    26   6.6  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score =  140 bits (340), Expect = 2e-34
 Identities = 81/211 (38%), Positives = 116/211 (54%), Gaps = 6/211 (2%)
 Frame = +3

Query: 273 AKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQVSWRNVFLAEYAGPLFVYL-WVYQRPWIL 449
           A G TL    TL    +  G+ +++KDLGPQ+ WR VF+ EY GPL ++L ++    WI 
Sbjct: 50  ADGTTLLPNTTLRKYGVGPGATIWVKDLGPQIGWRTVFMIEYLGPLVIHLFFILNYKWIY 109

Query: 450 YGTQTSSPEQVATVAAICWSAHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFA-LY 626
                    Q   +A +    H+ KR +E++F+HRFS  TMPL+N+F+NCA+Y L + L+
Sbjct: 110 RKDYNLCLNQ--KIAFVLVMLHFMKREYESIFVHRFSLATMPLRNIFKNCAHYHLLSGLF 167

Query: 627 VAYHVNHPL----YTAPCTTCYYIGLGGFVLCELGNLSIHILLKNLRPPGTKIRRIPKPD 794
           +AY +  P     Y  P    + I   G+    L N   HI+L++LRP G+K R IP   
Sbjct: 168 LAYFIYGPWHANDYIKPNHLLFLI--VGWAFAVLSNFRTHIILRDLRPAGSKKRVIPTGY 225

Query: 795 GNPFSLLLNFVSGPNYTYEFGSXLFFTIMTK 887
           G       N VS PNY +E    LFF ++TK
Sbjct: 226 G------FNLVSFPNYFFESLGWLFFALLTK 250


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 33.9 bits (74), Expect = 0.033
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +3

Query: 171 IHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFL- 347
           + V  ESS+  +KE I       +  +RQ  +L   G+ LKDE++L +  IQDG  + L 
Sbjct: 18  VTVDSESSVLALKEAIAPVA--DIEKERQ--RLIYAGRVLKDEESLKTYKIQDGHSIHLV 73

Query: 348 KDLG 359
           K LG
Sbjct: 74  KTLG 77


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
 Frame = +3

Query: 135 ILSVSS--AKPLGKIHVTGESSIKNVKEKIQQSVKKSLYP--DRQALKLEAKGKTLKDED 302
           ILSV S  AK +     T +SS K  +E+  +   +S+YP  + ++  +E  GK+L+D D
Sbjct: 362 ILSVVSFLAKMVPPSSFTQKSSAK--EEESDKVKGESVYPKPESESYDVEMNGKSLEDSD 419

Query: 303 TLNSLNIQDGSK 338
           +L+ L + +  K
Sbjct: 420 SLSELYLTNEEK 431


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +3

Query: 138 LSVSSAK---PLGKIHVTGESSIKNVKEKI 218
           LS++SAK   P GK+H T E   +NVK+K+
Sbjct: 31  LSLNSAKWEYPEGKVHETQEERCQNVKKKL 60


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 156 KPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDED 302
           KP  K     E   KN  E   +   +  YP  ++LK    G T++DE+
Sbjct: 27  KPRKKNLGNNEWRFKNAGEYFDEDNNEEEYPSLESLKTVGNGDTIQDEE 75


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +3

Query: 450 YGTQTSSPEQV-ATVAAICWS-AHYAKRLFETLFIHRFSHGTMPLKNLFRNCAYYWLFAL 623
           Y  ++  P +  ++V  I  S + Y +R F+   +  F    M LK   +N   Y     
Sbjct: 640 YSGESKEPNKADSSVVDIKQSDSSYRRRSFKKSLLTGFCLALMALKFAIQNMPPYD---- 695

Query: 624 YVAYHVNHPLYTAPCTTCYYIGLGGFV 704
           Y  YH N  L+TA   T ++ GL  F+
Sbjct: 696 YTPYHPNEKLFTAGIWTIHF-GLDNFM 721


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 192 SIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSL-NIQ 326
           S+  +   +Q S+  SL PD+ A  +E   K L    T+N L NIQ
Sbjct: 365 SMSEIVTSMQMSISSSLSPDQCAKAIELLSKALPAWCTINLLGNIQ 410


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +3

Query: 198 KNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLGPQVS 371
           K+V+E  +   K+         + E++GKT  +   L+   +++ SKLF  D+   VS
Sbjct: 48  KSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSPKKVENLSKLF-NDINEDVS 104


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 632 LSCEPSPIHCSLYYLLLHRTWRFCSLRIRKPEHSHTFEEPSSARHE 769
           L+ E +P + SL + +    ++ C L  +KPE+S T E+ + A  +
Sbjct: 769 LALEKNPENPSLLFNVAFVQFQLCELIRQKPENSRTVEDLNFAMQQ 814


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +3

Query: 141  SVSSAKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLN 320
            +V     L K+H    S ++N+K ++Q++ K+ +  D   ++      T    +    LN
Sbjct: 1479 AVEKLGALQKLHSESLSLMENIKSQLQEA-KEKIQVDESTIQELDHEITASKNNYEGKLN 1537

Query: 321  IQDGSKLFLKDLGPQVSWRNVFLAE 395
             +D     ++DL   +   N  LAE
Sbjct: 1538 DKDS---IIRDLSENIEQLNNLLAE 1559


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +3

Query: 144 VSSAKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNS 314
           ++SAK      V  ESS+K+   ++ Q +K+ +      +  E   +TLK+ +TL +
Sbjct: 504 LNSAKLKLSKQVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKT 560


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 416 LLVGVSKTVDFIWYTNVKS*ASSYSCSNMLVS 511
           L +   K+ DF WYT   + ++ YS S + +S
Sbjct: 168 LYLAQDKSADFQWYTKRAAISAIYSASELFMS 199


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +3

Query: 189 SSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDEDTLNSLNIQDGSKLFLKDLG 359
           +SI     ++++ V   L  D + L+ E K ++++DE   + ++   G   F+K  G
Sbjct: 214 ASITTPSLRMREDVVAYLRADNKNLQYEPKSRSMRDETGYHMVDDSSGGAGFVKASG 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,907,935
Number of Sequences: 5004
Number of extensions: 86835
Number of successful extensions: 226
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)