Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A09
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.1  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   3.8  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.6  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 99  CPHGGTPFIKEETHNLEYFCR 161
           CP    PFI E  H+LEY  R
Sbjct: 233 CPK--CPFITEYKHHLEYHLR 251


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = +2

Query: 227 SMEMTKYDIKNYLEKIYEVPVVDVRTKINMGKFKK--DVVKGYVIKEDDVKVAFVTLPKT 400
           S E  +Y    Y  + Y   V+    K  +G F +  DVV G  ++E  V      L  +
Sbjct: 406 SPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEVREFVVNYIDDLLVAS 465

Query: 401 MTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKS 517
            T          +NE  EH + + E  K  R  I+  KS
Sbjct: 466 ET----------LNEHLEHLRQVFEKLKQARMTINLEKS 494


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 125 QRGNPQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYE 280
           Q G    R+   NF   L   +  + P  +HFH S   +K + K  L K  E
Sbjct: 388 QTGEQFARLLRHNFNRHL---NSNRAPLGLHFHASWLKSKKEFKEELIKFIE 436


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 125 QRGNPQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIKNYLEKIYE 280
           Q G    R+   NF   L   +  + P  +HFH S   +K + K  L K  E
Sbjct: 395 QTGEQFARLLRHNFNRHL---NSNRAPLGLHFHASWLKSKKEFKEELIKFIE 443


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,563
Number of Sequences: 336
Number of extensions: 2674
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)