Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A09
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0070 + 13045122-13045715                                         36   0.027
05_07_0307 - 29111643-29112104,29112222-29113214                       31   1.0  
11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577...    29   4.1  
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    28   7.2  
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746...    27   9.5  

>07_03_0070 + 13045122-13045715
          Length = 197

 Score = 35.9 bits (79), Expect = 0.027
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
 Frame = +2

Query: 149 VFLPNFWMKLVRPHPKQLPNIVHFHCSM--EMTKYDIKNYLEKIYEVPVVDVRTKINMGK 322
           +   N  +KL+ P P  L ++  F        +K DI+  LE +Y   V +VRT +NM +
Sbjct: 10  IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNM-E 66

Query: 323 FKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS--INEEEEHAKSLDESKK 484
            KK     ++  + D K A+VTL   +    PDLF     + E E  A +    +K
Sbjct: 67  GKKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLFPIGLVLGERERKASAAAARRK 121


>05_07_0307 - 29111643-29112104,29112222-29113214
          Length = 484

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
 Frame = +2

Query: 131 GNPQLRVFLPNFWMKLVRP--HPKQLPNIVHF-HCSMEMTKYDIKNYLEKIYEVPVVDVR 301
           G  ++ VF  N+  +L +    P ++   +H  +C+ E  +    NY    Y V   ++ 
Sbjct: 349 GEERIIVFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIE 408

Query: 302 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESK 481
             I         V   +++ DD+ VA + L + +  K  D  E     E + A    E  
Sbjct: 409 ELIKEVMVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASE--TKAESKDANKQTEEN 466

Query: 482 KNFRKYIDHNKSRPD 526
           K+ +   + N S  D
Sbjct: 467 KDSKAMENKNDSSTD 481


>11_01_0701 -
           5774234-5774404,5774456-5774456,5774558-5774763,
           5775157-5775303,5775423-5775628,5776391-5776580
          Length = 306

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +2

Query: 356 KEDDVKVA-FVTLPKTMTFKYPDLFEKSINEEE---EHAKSLD--ESKKNFRKYIDHN 511
           KED+   A  +  P      YPDLFE+    E     H+ S++  + KK   +Y  HN
Sbjct: 42  KEDEETTADLLDAPPVFLIDYPDLFERGWGWERLFPYHSSSVEWPQFKKYLEEYSSHN 99


>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 140 QLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDI 253
           +L VF P  W  ++  H ++  NI+     +E+   DI
Sbjct: 547 RLTVFYPTLWKTVIASHSQECENIIVLRKMLELRTGDI 584


>01_06_0465 -
           29573972-29574110,29574300-29574343,29574434-29574602,
           29574707-29574894,29575081-29575145,29575257-29575311,
           29575502-29575594,29576035-29576130,29576259-29576302,
           29576419-29576431
          Length = 301

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 416 PDLFEKSINEEEEHAKSLDESKKNFRKYI-DHNKSRPDIPSWFSI*SFINTN 568
           PD + K++   E  A+ + ES +   KY+ D    R D P  F    F +TN
Sbjct: 106 PDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTN 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,166,159
Number of Sequences: 37544
Number of extensions: 231812
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)