Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A08
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    24   2.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   2.1  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   6.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.5  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 733 PEARLQLPTHTAQVEEASPQATPPPTV 813
           P   +Q+P   A ++++ P  +  PTV
Sbjct: 106 PSYSMQVPQQGASIDDSDPDPSSEPTV 132


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 733 PEARLQLPTHTAQVEEASPQATPPPTV 813
           P   +Q+P   A ++++ P  +  PTV
Sbjct: 554 PSYSMQVPQQGASIDDSDPDPSSEPTV 580


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 343 LIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPSWL 465
           +  AA    +  +Y     + IT+ N+R R    L +PS+L
Sbjct: 2   MATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 42


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 345 DRRRQTLADTSYVPQQENEVYYP 413
           D   QT++ T+ V Q+E E Y P
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSP 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,125
Number of Sequences: 438
Number of extensions: 5562
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)