Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A07
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...   129   6e-31
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    87   4e-18
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    33   0.042
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    29   0.69 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    29   0.91 
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   2.1  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    28   2.1  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   6.4  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   8.5  

>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score =  129 bits (311), Expect = 6e-31
 Identities = 59/171 (34%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
 Frame = +3

Query: 324 LEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ-IGDWLKKMLHYNLVGGKHTRGITTVIS 500
           +  ++++  F+  LP  +  + N  K   +P  + +W K  L +N +GGK+ RG++ + S
Sbjct: 1   MSAVDKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDS 60

Query: 501 YKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGIT 680
           Y+ +     + E     A  LGW VE+ Q++ ++ DDIMD S  RRG PCWY  P VG  
Sbjct: 61  YEIL-LGHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVG-N 118

Query: 681 CAFNDSLLIHSSLFEFLKTNFRTNPNYIKMFELFNETLWRTSMGQHLDHVT 833
            A ND+ ++ S+++  LK +FR    Y+ + ELF++  ++T +GQ LD +T
Sbjct: 119 IAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQQLDLLT 169


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 1/162 (0%)
 Frame = +3

Query: 342 KKMFDDLLPEVIMTLQN-KSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK 518
           KK   D  P V+  ++     +   P+  + L   +  N +GGK+ RG+  + S  ++  
Sbjct: 12  KKRLLDFFPVVLEGIREILESMQYFPEETEKLLYSIKRNTLGGKNNRGLAVLQSLTSLIN 71

Query: 519 PEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDS 698
            E + E   + A  LGW +E+ Q   ++ DDIMD S  RRG+ CWY    VG+  A N+S
Sbjct: 72  RE-LEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYL--VVGVRRAINES 128

Query: 699 LLIHSSLFEFLKTNFRTNPNYIKMFELFNETLWRTSMGQHLD 824
            L+ + +   ++  FR  P Y+ + + F E  + T +GQ  D
Sbjct: 129 QLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQED 170


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +3

Query: 288 NNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGG 467
           N S+N T +  NL+ +  KK    +LP   +TLQ K KL      G   K  LH +++ G
Sbjct: 254 NISSNSTVSDLNLKTL--KKRLRGVLPPSFLTLQEKKKLE---NRGVKKKTSLHKSVIEG 308

Query: 468 KHTRGI 485
           +  +G+
Sbjct: 309 EKIKGV 314


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 698 RVVKGACDAHFRTPIPTGHAASNA*TIHNVIQHNAICLKHFDTPSQFTSHFQSMF 534
           R++ G        P+   HA S+  TI ++I      L+   +PS+F + F+S F
Sbjct: 545 RIISGPLGLVHPDPLVASHARSSMQTIESLIHPRFPPLQKHLSPSEFENTFESRF 599


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 377 NYFREEIVEHF---LFINYFEIF*GCRHICAIILISDQLWPIFVCNF 246
           N F ++++E+F   + ++YF IF    H+C+    S  +W   +C+F
Sbjct: 504 NSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHF 550


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 401 LGFVL*CHNYFREEIVEHFLFINYFEIF*GCRHICAIILISDQLWP 264
           LGF +  H+Y       HF+  ++  +F  CR I   +L S  L P
Sbjct: 97  LGFCVLAHDYVNLINARHFMIEHFLSLFAFCRTILFSLLTSFLLVP 142


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 531 TEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMP 647
           T   L    +L    EM     ++ DD++D ++VRRG P
Sbjct: 112 TGQILPSQLRLAQITEMIHIASLLHDDVIDHANVRRGSP 150


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -1

Query: 343 FSLIISRFF-EAVVIFALLFLYLISCGQYLYV 251
           FSL+IS FF  +++I A+L L + SC  YL++
Sbjct: 171 FSLVISWFFTHSIIISAVLPLAISSC-MYLWM 201


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 408 EVPQIGDWLKKMLHYNLVGGKHTRGI 485
           E+ +I D+L+   H+  +GGK  RG+
Sbjct: 278 ELEEIVDFLRDPTHFTRLGGKLPRGV 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,841,097
Number of Sequences: 5004
Number of extensions: 83439
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)