Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_A06
(939 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 52 9e-08
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 41 2e-04
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 39 0.001
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 36 0.011
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 28 2.2
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 27 3.8
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 3.8
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 27 3.8
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 5.0
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 8.8
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 52.4 bits (120), Expect = 9e-08
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +1
Query: 181 DRRIKNGVLEYYLKWKGYSDEDNTWEPEDNL 273
DR KNG+ EYY+KW GY DNTWEPE NL
Sbjct: 30 DRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +1
Query: 175 VLDRRIKN--GVLEYYLKWKGYSD-EDNTW-EPEDNLDCPDLI 291
+LD R+K +YYLKW+GY D DNTW + ED C +LI
Sbjct: 181 ILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELI 223
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 193 KNGVLEYYLKWKGYSD-EDNTWEPE-DNLDCPDLIQ 294
K G EY LKW+GY D DNTW E D C LI+
Sbjct: 94 KGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIE 129
Score = 30.3 bits (65), Expect = 0.41
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 547 PAKQANVRCPQVVIQFYEERLTW 615
P+ N +CPQ ++QFYE LT+
Sbjct: 302 PSTITNKKCPQKMLQFYESHLTF 324
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +1
Query: 175 VLDRRI-KNGVLEYY-LKWKGYSDEDNTWEPEDNL 273
++D ++ +NG ++ Y ++W YS +TWEP +NL
Sbjct: 13 IVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 526 TDEADLVPAKQANVRCPQVVIQFYEE 603
T+++ L PAKQ N + P+ + Q Y+E
Sbjct: 75 TEDSSLSPAKQENEKSPEGIEQKYQE 100
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 731 MSFDYFFIGKTNLN*LFHGCFFITLPIVSFLL*HYKLXIL 850
M DY T+ F G FFI P+VSFL+ L +L
Sbjct: 1 MDNDYTTSTTTSRRPRFWGFFFILFPLVSFLMWTIGLIVL 40
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 208 EYYLKWKGYSDEDNTWEPEDNL 273
E+ +KW +S TWEP +N+
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNI 236
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 122 TRKKKTNQKPKRNFLLKKFWTGALRMVFW 208
T+ K +KP +NF+ + WT L +F+
Sbjct: 39 TKHKSLARKPSQNFITRTIWTFLLLGIFF 67
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 193 KNGVLEYYLKWKGYSDEDNTWEPED 267
+ G EY++KW+ ++ TWE D
Sbjct: 316 EEGKTEYFVKWRQLPYDNCTWEDAD 340
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 268 YPLVPMYYLHHCILSISSNI 209
YPL P++ L +C+L I S++
Sbjct: 513 YPLAPIFSLVNCVLYIRSSV 532
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,434
Number of Sequences: 5004
Number of extensions: 61945
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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