Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A04
         (817 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4M725 Cluster: Putative uncharacterized protein precur...    35   2.1  
UniRef50_A0CKF2 Cluster: Chromosome undetermined scaffold_2, who...    33   6.5  

>UniRef50_A4M725 Cluster: Putative uncharacterized protein
           precursor; n=1; Petrotoga mobilis SJ95|Rep: Putative
           uncharacterized protein precursor - Petrotoga mobilis
           SJ95
          Length = 561

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 550 NSTGLNVPNLVMRQNQLTNVFRQLNFRRI-LMFFNSDVPNIKNCNVSISE 696
           NS  +   N+ +R++ L+   +  NF+ I  +FF S++P I  CNVS SE
Sbjct: 93  NSVLIIDENVYIREDVLSTFLQLNNFKDIDNIFFYSEIPKITTCNVSTSE 142


>UniRef50_A0CKF2 Cluster: Chromosome undetermined scaffold_2, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_2, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1749

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = -3

Query: 764  FMNYIRTDIVFYRYDIVNLLVY-----YSLIETLQFFIL 663
            ++NY+  +++FY   IVN+L+Y      S+I    FFI+
Sbjct: 1310 YINYLNDNLIFYEQQIVNILIYVIVAELSIITVFMFFII 1348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,126,567
Number of Sequences: 1657284
Number of extensions: 11096508
Number of successful extensions: 22656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22639
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)