Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A04
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   5.6  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   7.4  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    25   9.7  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   9.7  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 10  HGLRRKRRQTRVKFYKKKKQNVFRN 84
           HG+ +KR +T  +F   K  NVFR+
Sbjct: 248 HGIGQKRSETEERFLFTKTCNVFRS 272


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 529 IVSIVSINSTGLNVPNLVMRQNQLTNVFRQLNFRRILMFFNSDVPNIKN 675
           I  +V      LN+   +++QN++  V R+   RR L  FN    + +N
Sbjct: 360 IKGVVDSEDLPLNLSREMLQQNKIMKVIRKNLVRRCLDMFNEIAEDKEN 408


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 164 GITTSKTQIKKGYFKNIMSLSHADLFQL 81
           G TT   Q+KK YF     +S+AD+ +L
Sbjct: 265 GSTTEAAQLKKNYFLPENIISNADVTRL 292


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 210 PKKPI*TTLITFAVPWYYYFKNTNKKRLF*KHN 112
           P K +  T+IT  V  + YF+NT+ K    +H+
Sbjct: 131 PHKYLIVTMITAGVSIFSYFQNTSSKGKHAEHD 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,648
Number of Sequences: 5004
Number of extensions: 53166
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)