Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A04
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine rece...    32   0.56 
U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine rece...    32   0.56 
AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm rece...    29   3.0  

>U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 9 protein.
          Length = 351

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +3

Query: 405 FSQEHSKTLKQMPL**SMIITYLIILEHFLTIQMVRKQNNFN 530
           F+ ++++T ++ P+    IIT+L+I+    T+ M+ + +NF+
Sbjct: 138 FAMKNAETYEKTPVKLGPIITFLLIIIDLTTVSMIHRNSNFD 179


>U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 8 protein.
          Length = 351

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 12/42 (28%), Positives = 28/42 (66%)
 Frame = +3

Query: 405 FSQEHSKTLKQMPL**SMIITYLIILEHFLTIQMVRKQNNFN 530
           F+ ++++T ++ P+    IIT+L+I+    T+ M+ + +NF+
Sbjct: 138 FAMKNAETYEKTPVKLGPIITFLLIIIDLTTVSMIHRNSNFD 179


>AF022972-2|AAC48242.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 112 protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -1

Query: 397 LIF*YIIA*FRVTIVNLINGNTR 329
           LI  +II  FRVTI+N+I GN R
Sbjct: 299 LILIFIIREFRVTILNIIRGNER 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,730,895
Number of Sequences: 27780
Number of extensions: 299303
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)