Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A04
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    26   0.48 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   7.8  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   ELSHGLRRKRRQTRVKFYKKKKQNVFRN 84
           E+ HGL +K  Q + + YK  K+N+  N
Sbjct: 249 EIIHGLTKKVIQLKKEEYKSGKRNIIDN 276


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 183 LVLFILAFWGFVQSASVLIF 242
           L +  LAFW F+ S  +L F
Sbjct: 388 LTVVCLAFWSFIVSTILLWF 407


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 442 GICFRVFECSCEKSL 398
           GIC    +CSC K +
Sbjct: 77  GICAEGMQCSCNKCI 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,072
Number of Sequences: 438
Number of extensions: 3734
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)