Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A02
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    84   2e-17
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    29   0.64 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    28   1.5  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    28   1.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.4  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   7.9  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 3/179 (1%)
 Frame = +1

Query: 256 QIGGEKNGGTRTV-PL-KRRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLA 429
           ++ G KNGG R V P  +    +YP   +       +  +    ++R +L  GTVCILLA
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARK--AVRPTKLRASLAPGTVCILLA 62

Query: 430 GRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPKHFN 606
           GR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS  +I +    + K F 
Sbjct: 63  GRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK-FT 120

Query: 607 DDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDRR 783
             YF              + +  FA    K     +R  DQK VD  ++ AI A P+ +
Sbjct: 121 KAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMK 175


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 464 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEAQIFS 330
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  ++ FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
 Frame = +2

Query: 563  PEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQST 742
            P F  +TSN  +TS  I S   R+      ++   +TS   K   T  +S+A      S 
Sbjct: 888  PTFKFSTSNSGSTSYSIPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSA 947

Query: 743  RL*SKPSEPDPTEGAPRIPQ--SGLRTPLXPISPSAAL 850
               +  +EP     +  + +  S + T    + P ++L
Sbjct: 948  SSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSL 985


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +2

Query: 593 QNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 730
           +NTS  +T   IRS SN   + K + T LP+ K+N F  S+++P++
Sbjct: 180 ENTSGDLT---IRSDSNY--SIKSLTTWLPKWKKNDFKTSNSQPVK 220


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +2

Query: 581  TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 760
            +S   NTS  ITS  + ++S   +++  V +S P    +   L+S+ PI   +T   S P
Sbjct: 3158 SSTTLNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSV--LNSSTPITSSTTLNTSTP 3215

Query: 761  -SEPDPTEGAPRIPQSGLRTPLXPISPSAAL 850
             +       +  I  S +     PI+ S+ L
Sbjct: 3216 ITSSSVLNSSTAITSSSVLNSSTPITSSSVL 3246



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +2

Query: 581 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 760
           +S   NTS  ITS  + ++S   +++  + TS P    +   L+S+ PI   +    S P
Sbjct: 686 SSTALNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSV--LNSSTPITSSTALNTSTP 743

Query: 761 -SEPDPTEGAPRIPQSGLRTPLXPISPSAAL 850
            +       +  I  S +     PI+ S+ L
Sbjct: 744 ITSSSVLNSSTPITSSSILNSSTPITSSSVL 774


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 635 ASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTEGAPRIPQS 805
           AS+  S  + V+ S  +++ +     +++ I   +  L  + SEP  TE A  IPQS
Sbjct: 119 ASSTLSMGEPVVDSEIEEEEDLASQLTSRAISLSNLSLHGRESEPSKTELATSIPQS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,436
Number of Sequences: 5004
Number of extensions: 70864
Number of successful extensions: 239
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)