Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_A02
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 105 6e-23
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 105 6e-23
03_02_0674 - 10329933-10331537 30 2.7
02_02_0470 - 10700092-10700505 30 2.7
01_06_0357 - 28668894-28669238,28669510-28669537,28669578-286696... 30 2.7
03_04_0100 - 17279903-17280107,17280131-17280678 29 4.8
10_08_0951 - 21769342-21769752 29 6.3
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 28 8.3
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116... 28 8.3
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 28 8.3
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 105 bits (251), Expect = 6e-23
Identities = 70/156 (44%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Frame = +1
Query: 322 PTQEKICASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 495
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 496 GPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDI 675
GPF N P+RR+ Q YVI TST++ + + K F+D YF EG ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-EL 185
Query: 676 FATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPD 777
F T+KE K +P E +K DQK VD +IKAI A PD
Sbjct: 186 FETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD 220
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 105 bits (251), Expect = 6e-23
Identities = 72/175 (41%), Positives = 95/175 (54%), Gaps = 6/175 (3%)
Frame = +1
Query: 271 KNGGTRTVPLK----RRKSFYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH 438
KNGGT K FYP + + R + ++R + GTV ILLAGR+
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTR--KANPTKLRSTITPGTVLILLAGRY 88
Query: 439 AGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 618
GKRVV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D YF
Sbjct: 89 MGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKYF 147
Query: 619 XXXXXXXXXXXXXXEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPD 777
EG ++F T+KE K +P + +K DQK VD +IKAI PD
Sbjct: 148 ---ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD 197
>03_02_0674 - 10329933-10331537
Length = 534
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +2
Query: 572 HSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL* 751
H+ ++ ++ +R+R++ ++ K + P KK+ T SS + + S
Sbjct: 160 HATPTSLPKRIVIEADQRVRASPDLDMKVKHASPAPPFKKKATADCSSRVDLAKTSQPSL 219
Query: 752 SKPSEPDPTEGA-PRIPQSGLRTPLXP 829
+K S P GA + P G T P
Sbjct: 220 TKTSAPPVVAGARVKAPDMGSATKANP 246
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 397 LKIGTVCILLAGRHAGKRVVLVGILPSG 480
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>01_06_0357 -
28668894-28669238,28669510-28669537,28669578-28669635,
28669836-28669916,28670395-28670526,28670609-28670926,
28672495-28673317
Length = 594
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 758 PSEPDPTEGAPRIPQSGLRTPLXP-ISPSAALL 853
P P P PR+P + R PL P SP A+LL
Sbjct: 6 PPPPPPPPSPPRLPLTAHRLPLPPATSPPASLL 38
>03_04_0100 - 17279903-17280107,17280131-17280678
Length = 250
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 848 AQPMGILXRAESEGRFEVSAEHLLSGRAPMALITASS 738
A P G+ + E+E E A HL RA +A+I + +
Sbjct: 2 ASPSGVATKVEAEAEAEAVANHLAELRARLAMILSDA 38
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 397 LKIGTVCILLAGRHAGKRVVLVGILPSG 480
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = +2
Query: 557 PPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQ 736
P P+ H+ + TS T++ I + +A +V T+ Q+++ PI++
Sbjct: 406 PHPQQHNEVLLQKGTSRTSTTQLINHQAPSLQHAVKVETTQQQQQQQPPKSIKPAPIQQS 465
Query: 737 STRL*SKPSEPDPTEGAPRIPQS 805
S P + PR+P S
Sbjct: 466 SAYPQQYPKHQHHNQALPRVPPS 488
>02_05_0030 + 25209067-25209130,25209231-25209400,25210482-25211668,
25211695-25212011,25212669-25213374,25214248-25215448
Length = 1214
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 820 RSPKAALRYPRSTFCRVGLRWL*SQPRRL 734
RSP A LR+PR F L W PR L
Sbjct: 1011 RSPFAGLRHPRGVFWNGSLVWAMLSPRLL 1039
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 85 LQVRQQAWPPL*AVLEPYSNRVQEKKK 5
L +R Q+W P +E S+R++EKKK
Sbjct: 303 LSLRFQSWEPSNGEMETRSSRIKEKKK 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,385,950
Number of Sequences: 37544
Number of extensions: 532734
Number of successful extensions: 1392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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