Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_A02
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   117   9e-27
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U97194-2|AAN84846.1|  806|Caenorhabditis elegans Prion-like-(q/n...    28   7.4  
U97194-1|AAK68236.1|  788|Caenorhabditis elegans Prion-like-(q/n...    28   7.4  
AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative MAP-...    28   7.4  
AC087079-5|ABC48240.1|  367|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  117 bits (282), Expect = 9e-27
 Identities = 64/134 (47%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
 Frame = +1

Query: 385 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 561
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 562 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVD 741
            ++++   K+P+H ND+YF               G +IFA+ K +Y  SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180

Query: 742 EAVIKAIGARPDRR 783
             ++ AI   P+ +
Sbjct: 181 APILAAIKKHPEHK 194



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 121 RNYDLGNGVMRFSKSKMFHKKAKYK 195
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 780 KVLRGYLKAAFGLRSXQYPHRLRF 851
           K L GYL   F L   QYPH+++F
Sbjct: 194 KFLFGYLGTRFSLGKNQYPHKMQF 217


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 316 FYPTQEKICASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 450
           FYPT+    A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 629 RSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKPS 763
           RSA +V+    +V+  + +  R + HLS+++PI  +S    S P+
Sbjct: 364 RSAVSVEGVLLKVLAEVAELVRQSQHLSASEPITEESPSAGSPPA 408


>U97194-2|AAN84846.1|  806|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform b protein.
          Length = 806

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
 Frame = +2

Query: 560 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT--SLPQKKRNTFH--LSSAKPI 727
           PP FH A  N Q  +MM   +RI  A + Q    R  +  ++     +  H    S +  
Sbjct: 639 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRTPSRQTISVSDSHKIHELAKSRENQ 697

Query: 728 RRQSTRL*SKPSEPDPTEGAPRIPQSGLRTP--LXPISPSAALL 853
           +RQ +     PSE   T G    PQ     P  + P +P + LL
Sbjct: 698 QRQQSATPKTPSESVSTTGVV-TPQRQFLPPQMMQPGTPQSILL 740


>U97194-1|AAK68236.1|  788|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform a protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
 Frame = +2

Query: 560 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT--SLPQKKRNTFH--LSSAKPI 727
           PP FH A  N Q  +MM   +RI  A + Q    R  +  ++     +  H    S +  
Sbjct: 621 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRTPSRQTISVSDSHKIHELAKSRENQ 679

Query: 728 RRQSTRL*SKPSEPDPTEGAPRIPQSGLRTP--LXPISPSAALL 853
           +RQ +     PSE   T G    PQ     P  + P +P + LL
Sbjct: 680 QRQQSATPKTPSESVSTTGVV-TPQRQFLPPQMMQPGTPQSILL 722


>AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative
           MAP-like protein protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
 Frame = +2

Query: 560 PPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT--SLPQKKRNTFH--LSSAKPI 727
           PP FH A  N Q  +MM   +RI  A + Q    R  +  ++     +  H    S +  
Sbjct: 621 PPPFHPAMMNPQMAAMM-DQQRIAVAMSQQQQMSRTPSRQTISVSDSHKIHELAKSRENQ 679

Query: 728 RRQSTRL*SKPSEPDPTEGAPRIPQSGLRTP--LXPISPSAALL 853
           +RQ +     PSE   T G    PQ     P  + P +P + LL
Sbjct: 680 QRQQSATPKTPSESVSTTGVV-TPQRQFLPPQMMQPGTPQSILL 722


>AC087079-5|ABC48240.1|  367|Caenorhabditis elegans Hypothetical
           protein Y37E3.5b protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 689 KRNTFHLSSAKPIRRQSTRL*SKPSEPDPTEGAPRIPQSGLRTPLXPISPSA 844
           K  + H+  + P+   S+ + S   +  P  G PR P    +T   P+SP +
Sbjct: 273 KSASVHIEESPPMSLASSTIPSDIIQSTPETGTPRDPVKISQTSTKPVSPES 324


>Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical
           protein F25B3.4 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 728 RRQSTRL*SKPSEPDPTEGAPRIPQSGLRTPLXPISPS 841
           + + T L +KP   + TE   R+PQS  +T + P + S
Sbjct: 15  KTERTELETKPEIANETEKTRRVPQSNSKTAITPENKS 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,860,095
Number of Sequences: 27780
Number of extensions: 420621
Number of successful extensions: 1171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)