Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P24
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...   142   6e-35
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    33   0.043
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    29   0.53 
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    28   1.6  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   2.1  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    26   6.6  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.6  

>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score =  142 bits (343), Expect = 6e-35
 Identities = 94/249 (37%), Positives = 144/249 (57%), Gaps = 20/249 (8%)
 Frame = -1

Query: 746 ASAVIKSYSPELIVHPLL---DK---QDAVEE----ILPWFDRLHSIVIGPGLGRDWQTF 597
           A+ VIKSYSP+LIVHP L   DK   +D+V++    I P   RLH+IVIGPGLGRD    
Sbjct: 70  AANVIKSYSPDLIVHPFLREKDKAGPEDSVDKCFELIKPMMGRLHAIVIGPGLGRDEWMQ 129

Query: 596 DIIAKLIEVIKQKKIPIIIDADGLFLITEKPNLIKDFDSPVILTPNKIEFERLSNKIDV- 420
           +I+AK+IE  ++  +P++IDADGL+LI ++P L+  + + VILTPN IEF+RL +K+D+ 
Sbjct: 130 EIMAKVIEYARKNDMPMVIDADGLWLIQQRPELVSGYHN-VILTPNVIEFKRLCDKLDIK 188

Query: 419 --------QTMGK-NVTILKKGPNDELISPFPEFTWSLETXXXXXXXXXXGDLLSGTIAT 267
                   Q  GK N+ I++KG +D +IS      ++             GD+L+G +AT
Sbjct: 189 SDGPDACNQLAGKLNLLIIQKGQSD-IISD-GATAYACSVPGGLKRCGGQGDILTGILAT 246

Query: 266 FMHWTLVNIDKIKIPDISNNKMLAASLSCYAACILVRKCNEKAFKLKGRSMLATDMIEFI 87
           F+ W    + K    + + +      L+ + A    R C+  AFK  GR+  +TD++  +
Sbjct: 247 FLAWRHAYLSKEWDTEGNMDAKECLFLAAFGASACTRWCSRLAFKECGRATQSTDLVRHV 306

Query: 86  HDAFEELYD 60
             A+  L +
Sbjct: 307 GKAYNALME 315


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 713 LIVHPLLDKQDAVEEILPWFDRLHSIVIGPGLGRDWQ--TFDIIAKLIEVIKQKKIPI 546
           L+V P  D++D  EEI+   + L   +   G+G   Q  T   +  L+E +KQ KIP+
Sbjct: 801 LVVGPDDDEEDLAEEIMEDLENLLGRIDTSGIGVSVQASTLGSLEALLEFLKQMKIPV 858


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = -1

Query: 674 EEILPWFDR-LHSIVIGPGLGRDWQTFDIIAKLIEVIKQKKIPIIIDADGLFLITEKPNL 498
           E++  W D  LHS ++  G  R     D++ +   V+K++K  +  D D LF  T     
Sbjct: 326 EQLKEWLDEALHSFIVVQG-PRGSGKRDLVDR---VVKERKNVLFFDCDRLFSTTNTEMF 381

Query: 497 IKDFDSPVILTPNKIEFERLSNKIDVQTMG 408
           +    S     P       +S+ ID+   G
Sbjct: 382 VSTLASQTGYFPLFSFLNNISSLIDMAAQG 411


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -1

Query: 590 IAKLIEVIKQKKIPIIIDADGLFLITEKPNLIKDFDSPVILTPNKIEFERLSNKIDVQTM 411
           +  LIE  K K + I  D D + L+   P L K    P  +  NK    RL   I  +T 
Sbjct: 139 VVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNK---ARLGTVIHQKTA 195

Query: 410 G-KNVTILKKGPNDELIS 360
               VT +++   +EL S
Sbjct: 196 AVLAVTEVREEDKNELAS 213


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 578 IEVIKQKKIPIIIDADGLF-LITEKP 504
           +E IKQ KIP  I+ DGLF LIT  P
Sbjct: 293 VETIKQHKIP-AINEDGLFYLITHLP 317


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 710 IVHPLLDKQDAVEEILPWF 654
           +V+PLL +Q  VEE   WF
Sbjct: 480 LVNPLLQRQQKVEEANKWF 498


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 271 AIVPDNKSPCPPHLRPDPPVSNDQVNSGNGL 363
           AI P + S  PPH+  DP    D  N+ + L
Sbjct: 181 AIHPPHHSSLPPHMGVDPSTMADAHNAHSSL 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,179
Number of Sequences: 5004
Number of extensions: 54849
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)