Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P24
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0085 - 9717360-9717390,9717478-9717603,9718600-9718666,971...    39   0.005
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996...    29   5.2  
07_03_0846 - 21983581-21986055                                         29   5.2  
06_01_0024 + 233101-233189,233259-233340,233430-233493,233636-23...    28   9.1  

>11_03_0085 -
           9717360-9717390,9717478-9717603,9718600-9718666,
           9718770-9718831,9718904-9719094,9720133-9720268,
           9720760-9720851,9721231-9721413
          Length = 295

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
 Frame = -1

Query: 533 DGLFLITEKPNLIKDFDSPVILTPNKIEFERLSNK-IDVQTMGKN--------------V 399
           DGLFLIT   +L++  +   ILTPN  E++RL  K ++ +   +N              +
Sbjct: 147 DGLFLITNNLSLVEG-NLLAILTPNVYEYKRLVQKVLNCEVNEENASEQLTALCQKIGGI 205

Query: 398 TILKKGPNDELISPFPEFTWSLETXXXXXXXXXXGDLLSGTIATFMHWTLVNIDKIKIPD 219
           TI++KG  D +IS     T  + T          GD+LSG++                  
Sbjct: 206 TIMRKGKAD-IISDGKTVT-QVSTFGSPRRCGGQGDILSGSV------------------ 245

Query: 218 ISNNKMLAASLSCYAACILVRKCNEKAFKLKGRSMLATDMIEFIHDAFEEL 66
              N M+   L C A  +L+RK    AF+   RS + TD+IE +  + E++
Sbjct: 246 ---NPMM---LGCIAGSLLLRKAASHAFEKNKRSTVTTDIIELLGKSLEDI 290


>09_03_0003 +
           11396076-11396386,11398803-11398869,11399194-11399698,
           11400903-11401038,11401186-11401257,11401891-11401923,
           11401924-11402047,11402387-11402437,11403437-11403563,
           11404230-11404298,11404369-11404486,11404755-11405151
          Length = 669

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 265 NVAIVPDNKSPC-PPHLRPDPPVSNDQVNSGNGLINSSL 378
           N A+ P N++P  PP+L  D   S  Q  S NG  N  L
Sbjct: 224 NGALWPANENPITPPYLLADYTFSTSQYTSDNGFYNICL 262


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 233 IKIPDISNNKMLAASLSCYAACILVRKCNEKAFKLKGRSMLATDMI 96
           +++PD + + + A+S +C  AC+    CN   +   G  +   D+I
Sbjct: 362 VRLPDNAQSAVAASSQACQVACLNNCSCNAYTYNSSGCFVWHGDLI 407


>06_01_0024 +
           233101-233189,233259-233340,233430-233493,233636-233826,
           233901-233978,234133-234207,234436-234506,234710-234826,
           234915-235016,235196-235316,235451-235537,235708-235794,
           236237-236338,236629-236692,237554-237580,237581-237636,
           238185-238256,238540-238622,238953-239001,239335-239397,
           239633-239722,239823-239909,240072-240146,240222-240280,
           240511-240604,240681-240899,240998-241092,241504-241594,
           241663-241767,241847-241885,242263-242352,242538-242639,
           242837-242918,243075-243160,243264-243362
          Length = 1030

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 348 VHLVIGDWGIWTEVWRTG 295
           V+LV+G WG+  EVW  G
Sbjct: 140 VYLVLGAWGLGWEVWMDG 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,491,941
Number of Sequences: 37544
Number of extensions: 308254
Number of successful extensions: 954
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)