Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P21
         (588 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    48   2e-04
UniRef50_Q4Y876 Cluster: Putative uncharacterized protein; n=1; ...    37   0.40 
UniRef50_Q5HVE2 Cluster: Type III restriction-modification enzym...    35   1.6  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 47.6 bits (108), Expect = 2e-04
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
 Frame = -1

Query: 468  PEFIRNKFRPIPISVFTLR-HINTVDPG*SDN--RHDNRLIVAAAGYSPNPDHA 316
            P F+RN      + + ++R H+ +V     D   RHDNRLIVAAA YSPNPDHA
Sbjct: 855  PWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHA 908


>UniRef50_Q4Y876 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 189

 Score = 36.7 bits (81), Expect = 0.40
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
 Frame = -3

Query: 442 TNTNFSIYFKAYKYSGPRVIRQSSR*SPYRCRRWLLPES*SRIIGGPYARLPTRAINKK* 263
           TN NF       KYS   ++ + S    Y+  +  +  S +  I   Y       IN+K 
Sbjct: 53  TNNNFYFEINNEKYSMDILVHEKSCLQYYKPCKSYIKNSNTNDIEQTYKEFKNGIINQKS 112

Query: 262 KRKSQSPHYRGSTVN-VKCYYSN*NKRDELYVVYFRYFKERLDNTNISQLIINFIKTF 92
           K K++    +   +N +  YY N +  D LY +   YF +   NT I  + IN I  F
Sbjct: 113 KIKNKDVPDKKKYINKISDYYINISTNDSLYNI-VEYFPKYFYNT-IKIMYINMILIF 168


>UniRef50_Q5HVE2 Cluster: Type III restriction-modification enzyme;
           n=2; Campylobacter|Rep: Type III
           restriction-modification enzyme - Campylobacter jejuni
           (strain RM1221)
          Length = 853

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 15/52 (28%), Positives = 31/52 (59%)
 Frame = -3

Query: 226 TVNVKCYYSN*NKRDELYVVYFRYFKERLDNTNISQLIINFIKTFFSTVLII 71
           +++++ +Y N NK  +L      +FK+   NT  ++ I+NF+K  F T+ ++
Sbjct: 324 SLHIEDFYKNINKESDLLNKSLEFFKKEYQNT-YAKTIVNFLKNNFKTLYML 374


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,589,415
Number of Sequences: 1657284
Number of extensions: 11109175
Number of successful extensions: 24845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24844
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)