Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P21
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.7  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   3.5  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    26   3.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   6.2  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.2  

>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 204 IVIKIKETSYMLFILDTSKSV*IILTYLN 118
           IV KIK+ + +LFI+  SK +  ++T +N
Sbjct: 129 IVRKIKDKNAILFIIANSKGIERVITLIN 157


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 208 YYSN*NKRDELYVVYFRYFKERL 140
           +Y N N R E Y+ YFR FK+R+
Sbjct: 177 HYQNPNIRTE-YISYFRRFKKRI 198


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 365 IALSLPPLATPRILITHHWWA 303
           +AL LPP  +P I + + W+A
Sbjct: 194 VALELPPACSPPIELVNRWYA 214


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 578 APREKSRKSHPACKIATRAEAEEISYFSPLLHNVLLCLNSF 456
           +P +  ++ HPA    T  + EEI      LH+ +   NSF
Sbjct: 199 SPNKLPKQKHPAYSFVTLPKREEILKRPASLHSRVESTNSF 239


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 179 LVSFILITIVTFYIYSGPAIMG*LALAFLFFIYC 280
           L++ +L  I+ FY  S P ++   ALA+L   YC
Sbjct: 100 LLNPLLSNIIPFYGASKPLVVHVAALAYLEQTYC 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,618
Number of Sequences: 5004
Number of extensions: 47472
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)