Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P21
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561...    29   2.1  
05_01_0150 + 1000613-1001275                                           28   6.3  
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558...    27   8.4  

>01_06_0902 +
           32853708-32853739,32854787-32855596,32856094-32856157,
           32856375-32856446
          Length = 325

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = -1

Query: 471 VPEFIRNKFRPIPISVFTLRH 409
           V EFIR+KF PIP SV  L H
Sbjct: 26  VTEFIRDKFIPIPASVDRLYH 46


>05_01_0150 + 1000613-1001275
          Length = 220

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 572 REKSRKSHPACKIATRAEAEEISYFSPLLHNVLLCLNSFEI 450
           R + R+S   C +A R +         L H +L C  S E+
Sbjct: 170 RIRRRRSSKGCAVARRLQEASCGAVRALFHRLLACTTSVEV 210


>09_04_0151 -
           15154063-15154296,15155616-15155660,15155749-15155820,
           15155932-15156024,15156282-15156351,15156716-15156912,
           15156946-15157215,15158620-15158757,15158841-15158930,
           15159041-15159247,15159987-15160154,15160300-15160503,
           15160584-15160670,15160748-15160861,15161689-15161835,
           15161914-15162063,15162211-15162276,15162376-15162480,
           15162625-15162798,15162930-15163154,15163534-15163590,
           15163858-15164019,15164234-15164302,15164391-15164471,
           15164823-15164925,15165011-15165156,15165285-15165359,
           15165441-15165508,15165586-15165667,15165745-15165858,
           15166358-15166476,15166692-15166781,15166862-15166988
          Length = 1382

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 533 ATRAEAEEISYFSPLLHNVLLCLNSFEINLDQYQ 432
           +TR+    +S+   L  N+ +   +F  N+D YQ
Sbjct: 645 STRSVDNALSFIEELFQNLFMMAKNFTFNIDNYQ 678


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,510,702
Number of Sequences: 37544
Number of extensions: 287485
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)