Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P20
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical...    27   4.1  
AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical...    27   4.1  
AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    27   5.5  
Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   7.2  

>AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical
           protein T07A9.12b protein.
          Length = 139

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 202 SFYFFFVVVIRSYTAQRD*RHPTCKVV 282
           S++F F++ +RS    +D R PT +V+
Sbjct: 54  SYFFVFIIYLRSCVEFKDYRGPTVRVI 80


>AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical
           protein T07A9.12a protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 202 SFYFFFVVVIRSYTAQRD*RHPTCKVV 282
           S++F F++ +RS    +D R PT +V+
Sbjct: 60  SYFFVFIIYLRSCVEFKDYRGPTVRVI 86


>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 72  NSSLAAQSYCEFQ*---RNC*IIGCRNITMFAKSFKHLNMTTNAIKFI-LFLFC 221
           N  +    +C F+    +NC  +GC   T F   + H    T  I F+ L L C
Sbjct: 142 NEDIVLYVFCNFKLNIPKNCAALGCAMNTCFFHYWTHQKSVTFTITFVCLLLLC 195


>Z68317-3|CAA92687.1|  599|Caenorhabditis elegans Hypothetical
           protein T01H3.3 protein.
          Length = 599

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 62  INXQFVXGRTKLLRISVKKLLNNRLS*HHHVCKII*TSQYDNQCNQIHFISFLWWLL--D 235
           +  Q +   +  + +S+  +++  ++ + H  +I   S Y  QC  + F++ +W +   D
Sbjct: 283 LKEQLIFITSMFMFLSIGPVVSWPIAHYFHALEISLDSVYYIQCGTLAFLTLIWSIFYRD 342

Query: 236 HTQ-HNAISAIQLVKL 280
             Q H  +S ++L K+
Sbjct: 343 RPQDHPWVSGVELNKI 358


>U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical
           protein C50F2.1 protein.
          Length = 575

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 211 NKMNLIALVVILRCLNDFANM 149
           N+ N+  L+ ILRC ND  NM
Sbjct: 344 NRRNITRLLEILRCGNDLKNM 364


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 1   KFXVRYFTSCKFMSSSSPKIHQXTIRXWPHK 93
           K+   +F   +F+S++S  +H+ +   WP+K
Sbjct: 102 KYFAWWFLHIQFLSAASLTVHRISAIYWPYK 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,731,645
Number of Sequences: 27780
Number of extensions: 157227
Number of successful extensions: 244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)