Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_P19
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|... 158 5e-40
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 28 1.3
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 5.2
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 5.2
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 5.2
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 25 9.1
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 9.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.1
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 9.1
>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
3|||Manual
Length = 109
Score = 158 bits (384), Expect = 5e-40
Identities = 69/102 (67%), Positives = 81/102 (79%)
Frame = -1
Query: 609 GNAXNGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 430
G+ G +F RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGITW+
Sbjct: 6 GDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWD 65
Query: 429 DDTLFEYLENPKKYIPGTKMVFAGLKKANERADLXAYLKSAT 304
++TLF YLENPKKYIPGTKM FAG KK +R ++ YLK AT
Sbjct: 66 EETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 27.9 bits (59), Expect = 1.3
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Frame = -2
Query: 524 DRIYMDSLAEKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRN----TSLEPRWCLLD 357
D + + K + D T R HG + S+ L + + LE + L D
Sbjct: 264 DNLVIAGCRNKSVLVYDLRTKKECVQRFYHGSSICSMQNLDFSQPKLLVSGLESKISLYD 323
Query: 356 SR------RQMSVLTXLPISNLLPSNFKVIENSIRSIFHNISGIYFL 234
R R S+++ + SNLL N +++N SIF + Y L
Sbjct: 324 CRFLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 443 PLALLASEYENPAAWPVFRPKNP 511
PL LL + +++PA W V + NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 320 ISNLLPSNFKVIENSIRSIFHNISGIYFL 234
+S+L + F+ I+N +SI++ GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 434 GMTTLSLNILRIPRNTSLEPRWCLLDSRRQMSVLTXLPISNLL 306
G T SLN R+ + SL WC + R + PI+++L
Sbjct: 416 GSITFSLNWSRLGQKISLPIMWCSVFDRSAVFWGLVFPITSIL 458
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 507 FFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLEN 400
FFG +TG A F+Y + +AK +N + LEN
Sbjct: 56 FFGSQTGTAEDFAYRFSTEAKA-NFNLTNMVFDLEN 90
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 328 KVSTLICLLESSKHHLGSRDVFLGILKIF 414
K+S L LL SKH L S +F I K++
Sbjct: 304 KISLLHFLLTESKHFLISDHIFSEIQKVY 332
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 518 FGPTLCLPPASTVWHWAHRCTK 583
+GP L + PAST+ +W T+
Sbjct: 891 WGPFLVIAPASTLHNWQQEITR 912
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 1 KPLTKLXSSLNHLTFNHSQHCQARXNYITQYIMY---QVHMYSQTTTAND 141
KPL L SL+ +++HC+ +Q + + + Y QT +++D
Sbjct: 29 KPLIDLNDSLDEQRNAYNEHCKNHDQQPSQQVRNMEDEANQYEQTDSSSD 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,679
Number of Sequences: 5004
Number of extensions: 52585
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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