Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P18
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    28   0.071
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   1.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.2  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 27.9 bits (59), Expect = 0.071
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 32  RRAPFISFFSLVFKRAASACSLDNLEPLLPVKTS 133
           R A  I F+ +      S+C+ DNLE L PV  S
Sbjct: 230 REAGLIPFYVVATLGTTSSCTFDNLEELGPVCNS 263


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 204 KTYTPLCREKKRPKALRLYEPDVQEVFTGSKGSKLSREQAEAARLK 67
           K Y  +    +   +LRL EP V+  F   +      ++AE  +L+
Sbjct: 137 KQYLSIAERAEFSSSLRLTEPQVKIWFQNRRAKAKRLQEAELEKLR 182


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 139  CAGGFHW 119
            CAGG HW
Sbjct: 1131 CAGGLHW 1137


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +3

Query: 207 FLSTLSCTDLLRKRYWPPSWGTILYRSWLTTLC 305
           F +T     + R+ YWP  + TI  R     LC
Sbjct: 143 FGATKVYNSMKREYYWPNMYRTIKKRLRSCDLC 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,532
Number of Sequences: 336
Number of extensions: 2801
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)