Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P18
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    39   7e-04
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.7  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   3.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.9  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   6.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   8.6  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    25   8.6  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
 Frame = -1

Query: 294 LARIDTELYPKKVASIVSEVSQYMKECLEMKTYT--PLCREKKRPKALRLYEPDVQEVFT 121
           L  +  EL  K+++  +    Q + + +E       PL  +  RP  +    P  +E ++
Sbjct: 695 LYSLKKELLSKRLSEKLLSTLQAVSDSIESAKANRKPLALQSHRPLGITSQVPKFEEGYS 754

Query: 120 GSKGSK-LSREQAEAARLKTKLKKEMKGALREIRRDKXYIA 1
             K S  +  E+A+  +L+ + +   KGA+R +R+D  +IA
Sbjct: 755 LDKSSHDIDPERAQLNKLRAQHRDAKKGAIRTLRKDARFIA 795


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 135 QEVFTGSKGSKLSREQAEAARLKTKLKKEMK-GALREIRRDK 13
           Q +    +  + +R++ E  + +TK KKEMK  AL +I  D+
Sbjct: 279 QSLLAERRNKRYTRKEMEQMKRRTKEKKEMKRRALYDIASDE 320


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 295 VSQDRYRIVPQEGGQYRFRSKSVHERVLRNENLHS 191
           ++ DR  +VP    +    S S+H  V +N++ HS
Sbjct: 708 MNNDRSFLVPSRDARNSLTSLSLHSNVAKNKSSHS 742


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 138 HPVHTTSKLWVS-FSLYTTECKFSFLSTLSCTDLLRKRYW 254
           HP H+T +LW + F      C    L+ +     LRK YW
Sbjct: 680 HPQHSTGELWSTIFLRMIFGCVIMQLTMMGLMS-LRKAYW 718


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
 Frame = -1

Query: 609 RLVPSALNYLRGILYY---CANTSI-LNQVQLVPPFMLHKMEKILNLNTDCSKMSVANKM 442
           RL  SA ++L  + ++   CAN S+ L++    P F+ +        N   S +S A + 
Sbjct: 310 RLQQSAEDFLYHLQFFFTLCANNSLYLSRFCYYPSFVPNTPFGGKWTNNGLSAVSSAYRT 369

Query: 441 AAKDLILESVDDDFKIRCLLISTVMLKEFFDNFNELEAQECMFE 310
              +  L  +D     +C+        EF +NF++   +E +FE
Sbjct: 370 RLLEPCLPELD-----KCVWFLLKNCDEFIENFSDFADEEYVFE 408


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 483 LNTDCSKMSVANKMAAKDLILESVDDD 403
           LN DCS+    ++  +KDL+++S+  +
Sbjct: 804 LNMDCSEFYCCDEEISKDLLIKSLSQN 830


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 474 DCSKMSVANKMAAKDLILESVDDDFKIRCLLISTVMLKEFFDNFNELEAQE 322
           DC K S+ + MA K L  +S D  FK +CL++     K    + N  E Q+
Sbjct: 315 DCCK-SIESTMAGKTL--DSTD--FKEKCLVLERQWSKSSIPSDNSSELQD 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,053
Number of Sequences: 5004
Number of extensions: 47088
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)