Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_P18
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 52 4e-07
04_03_0116 - 11448012-11448525,11448693-11448763,11449139-114494... 30 1.7
12_02_0466 + 19403855-19404347,19404359-19404582,19404659-194050... 29 2.9
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 29 2.9
11_06_0093 + 19999503-20000231,20000308-20000742,20000829-200016... 29 2.9
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 29 2.9
06_03_0046 - 15852653-15854560 29 2.9
09_02_0015 - 2980811-2980924,2981231-2981266,2981447-2981519,298... 29 3.8
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 29 3.8
11_04_0172 - 14474674-14474761,14474842-14475012,14475090-144755... 28 5.1
04_04_0045 + 22337089-22337385,22338437-22338715,22338728-223387... 27 8.9
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 27 8.9
>03_05_0223 - 22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 52.0 bits (119), Expect = 4e-07
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Frame = -1
Query: 408 DDFKIRCLLISTVMLKEFFDNFNELEAQECMFEYHIKLLARI-DTELYPKKVASIVSEVS 232
D+FK LL L+ F EL + +F L+ I D P + I+ EV
Sbjct: 745 DNFKASVLLSVAECLRGFVIIHEELCSFPEIFLPISSLMQEIMDKSDLPGLLQYILHEVI 804
Query: 231 QYMKECLEM--KTYTPLCREKKRPKALRLYEPDVQEVFTGSKGSKLSREQAEAARLKTKL 58
+ +K + + PL K++P+ +R P +E + RE+A+ ++K +L
Sbjct: 805 ELIKNRSDEVHASRQPLQMRKQKPEPIRQLNPKFEENYIKGLDYDPDRERAQMKKMKKRL 864
Query: 57 KKEMKGALREIRRDKXYIA 1
K E KGA+RE+R+D +++
Sbjct: 865 KSEKKGAMRELRKDNYFLS 883
>04_03_0116 -
11448012-11448525,11448693-11448763,11449139-11449421,
11449520-11449672,11449750-11450219,11451470-11451631,
11451718-11451987,11452229-11452633
Length = 775
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -1
Query: 180 EKKRPKALRLYEPDVQEVFTGS-KGSKLSREQAEAARLKTKLKKEMKGALRE 28
+K L P+ Q V+ K KLS+ Q +AAR+K +L++E+K LRE
Sbjct: 114 KKNSDGTLSFPNPEDQVVYQKIYKKHKLSKAQ-KAARIKAQLREELKEELRE 164
>12_02_0466 +
19403855-19404347,19404359-19404582,19404659-19405093,
19405180-19406024,19406353-19406635,19406903-19406977
Length = 784
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -1
Query: 114 KGSKLSREQAEAARLKTKLKKEMKGALRE 28
K KLS+ Q +AAR+K +L++E+K LRE
Sbjct: 296 KKHKLSKAQ-KAARIKAQLREELKEELRE 323
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -1
Query: 114 KGSKLSREQAEAARLKTKLKKEMKGALRE 28
K KLS+ Q +AAR+K +L++E+K LRE
Sbjct: 244 KKHKLSKAQ-KAARIKAQLREELKEELRE 271
>11_06_0093 +
19999503-20000231,20000308-20000742,20000829-20001670,
20001748-20001916
Length = 724
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -1
Query: 114 KGSKLSREQAEAARLKTKLKKEMKGALRE 28
K KLS+ Q +AAR+K +L++E+K LRE
Sbjct: 300 KKHKLSKAQ-KAARIKAQLREELKEELRE 327
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = -1
Query: 336 LEAQECMFEYHIKLLARIDTELYPKKVASIVSEVSQYMKECLEMKTYTPLCREKKRPKAL 157
L++ EC+ +K + Y + +IVS +Y ++C+++ P + P L
Sbjct: 931 LKSLECLPPAIMKYTVDLRLGRYESALKNIVSAGDEYHEDCMKLLNANP----QLFPLGL 986
Query: 156 RLY-EPDVQEVFTGSKGSKLSREQAEA 79
+L+ +PD + + G +LS E+ A
Sbjct: 987 QLFTDPDKRHQILEAWGDQLSEEKCFA 1013
>06_03_0046 - 15852653-15854560
Length = 635
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +2
Query: 371 TVLISKQRILKSSSTLSRIKSLAAILFATDILEQSVFK 484
T++ SK+R++ +SS + + KS A + D+L +SVF+
Sbjct: 137 TLVSSKKRLVHNSSKVQKGKSYAQAVQQRDVLVKSVFQ 174
>09_02_0015 -
2980811-2980924,2981231-2981266,2981447-2981519,
2981608-2981882,2982286-2982504,2983537-2983828,
2983863-2984221,2984634-2984714,2984746-2984889,
2985235-2985538,2985617-2985849
Length = 709
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 141 DVQEVFTGSKGSKLSREQAEAARLKTKLKKEMKGALREIR 22
D QE G ++ +E A +TK KK M+G +E R
Sbjct: 399 DAQEPLLEDAGQEVRAADSEEAVFRTKTKKGMEGKAKEAR 438
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1
Query: 114 KGSKLSREQAEAARLKTKLKKEMKGALRE 28
K KLS+ Q +AARLK +L+ E+K LRE
Sbjct: 257 KKHKLSKAQ-KAARLKAQLRVELKEELRE 284
>11_04_0172 -
14474674-14474761,14474842-14475012,14475090-14475517,
14478824-14478961,14479048-14479482,14479559-14479783,
14479860-14480159
Length = 594
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -1
Query: 114 KGSKLSREQAEAARLKTKLKKEMKGALRE 28
K KLS+ Q +AAR+K ++++E+K LRE
Sbjct: 232 KKHKLSKAQ-KAARIKAQIREELKEELRE 259
>04_04_0045 +
22337089-22337385,22338437-22338715,22338728-22338798,
22338883-22338926,22340670-22340884,22340958-22341082,
22341142-22341220,22341278-22341367
Length = 399
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 253 GHLLGVQFCIDPG*QLYVILKHAFLCL*LIKIVEELLQHHRTDQQTAD 396
G L G Q+ + ++ V LK +C L +++ ELLQH +D T D
Sbjct: 325 GTLTGAQWGLYDAFKVMVGLKIYLVCSLLGQLLVELLQHQPSDGWTED 372
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -1
Query: 480 NTDCSKMSVAN--KMAAKDLI--LESVDDDFKIRCLLISTVMLKEFFDNFNELEAQEC 319
NT SK S+A K+ +L+ L S + + IRC+ ++V+ F+N N L+ C
Sbjct: 597 NTKSSKSSIATRFKVQLHELMETLSSTEPHY-IRCVKPNSVLKPAIFENTNVLQQLRC 653
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,711,438
Number of Sequences: 37544
Number of extensions: 294743
Number of successful extensions: 694
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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