Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P17
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.2  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 326 FFITAIVFRQYFLWYIFV 379
           FF+  I FR + LW I V
Sbjct: 299 FFLCLIPFRVFILWIILV 316


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 284 PEKLFPFFTQLRAGFFITAIVFRQYFLWYIFVEIF 388
           P  + PF   L  GFF+       YF W  F+  F
Sbjct: 562 PPLVIPFL--LFGGFFLNVSSIPIYFKWLSFLSWF 594


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 284 PEKLFPFFTQLRAGFFITAIVFRQYFLWYIFVEIF 388
           P  + PF   L  GFF+       YF W  F+  F
Sbjct: 562 PPLVIPFL--LFGGFFLNVSSIPIYFKWLSFLSWF 594


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -3

Query: 484 LNAPTFVDKIIHLLKQALREKLANRIHVHSTYEDLHKYI--PKEILPKDYGGD 332
           +N    ++ +     QA  + +A     +S    L   +  P +ILP D+G D
Sbjct: 561 INGTLIIENVERASDQATYDCVAKNSQGYSARGSLEVQVMVPPQILPFDFGED 613


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 364 KEILPKDYGGDEESCSKLSEKWKKLLRQ 281
           +EI+PK Y G   +  +  +  +K+L Q
Sbjct: 53  QEIIPKSYFGTTTNLKRFYKVVEKILTQ 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,017
Number of Sequences: 336
Number of extensions: 4044
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)