Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_P17
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 33 0.045
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 31 0.24
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 29 0.56
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 29 0.74
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 29 0.97
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 28 1.7
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.2
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 3.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 3.9
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 6.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 6.9
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 6.9
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 9.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 9.1
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 33.1 bits (72), Expect = 0.045
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = -3
Query: 604 IIDFKNIHIGLLIKINPVVVKKAEVLCTEGIGTKIKGIHILNAPTFVDKIIHLLKQALRE 425
I+D K + I + + + ++A + + ++ +++NAP +L+K L E
Sbjct: 171 IMDLKGVGITSIHSVYSYI-RQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGFLDE 229
Query: 424 KLANRIHV-HSTYED-LHKYIPKEILPKDYGGD 332
+IH+ S Y+ L + IP + LP GG+
Sbjct: 230 ATVKKIHILGSNYKSALLEQIPADNLPAKLGGN 262
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 30.7 bits (66), Expect = 0.24
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 526 CTEGIGTKIKGIHILN-APTFVDKIIHLLKQALREKLANRIHVHSTYEDLHKYIPKEILP 350
C E + G+ IL+ +P + +++K ++ ++A +I + DL KYI ++P
Sbjct: 227 CLEYYYPQSLGVCILHKSPWIFRSVWNIIKGWIKPEIAAKIVFTQSANDLEKYIDYSVIP 286
Query: 349 KDYGG 335
GG
Sbjct: 287 TSLGG 291
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 29.5 bits (63), Expect = 0.56
Identities = 25/97 (25%), Positives = 43/97 (44%)
Frame = -3
Query: 502 IKGIHILNAPTFVDKIIHLLKQALREKLANRIHVHSTYEDLHKYIPKEILPKDYGGDEES 323
I G+H++N PT K ++ A + + YED + E+ G +E
Sbjct: 74 ISGLHVVNLPTLTLKPLY-WPSASKNDTLRVVRGLWMYEDTGLPVINELSDMLEEGYQE- 131
Query: 322 CSKLSEKWKKLLRQEEARKIIQDTEKLVSDETKRHES 212
+ W +L++EE K QD ++S KR++S
Sbjct: 132 VKPYAVNWDNVLKEEEEGKDSQDDPSVLSH--KRNKS 166
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 29.1 bits (62), Expect = 0.74
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = -3
Query: 388 EDLHKYIPKEILPKDYGGDEESCSKLSEKWKKLLRQEEARK--IIQDTEKLVSD-ETKRH 218
E L +Y+PK+ L ++GG + W +L+ ++R+ I++ K+ S T
Sbjct: 805 EPLDRYVPKDQLDSNFGGSLHFEYHHEKYWPQLVELCKSRRLGILEKWRKMGSKIGTSEW 864
Query: 217 ESKFNEEYMGMPGSFRR 167
+ K EEY+ + + R
Sbjct: 865 DLKGGEEYVELMQQYVR 881
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 28.7 bits (61), Expect = 0.97
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 197 IYGDAWIFQTFSCRLTLYKLLNIYNA 120
++GD W++ +S +L+ LL YNA
Sbjct: 127 VFGDGWLWLVYSPEKSLFSLLCTYNA 152
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = -3
Query: 478 APTFVDKIIHLLKQALREKLANRIHVHSTYEDLHKYIPKEILPKDYGGDEE---SCSKLS 308
AP + ++K L + +++ Y DL +YI + + K++GG + +
Sbjct: 277 APWLFQGVWSIIKSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPC 336
Query: 307 EKWKKLLRQEEARKIIQDTEKLVSDE 230
+ + L+ EARK ++ + ++ +
Sbjct: 337 QNEAEALKNVEARKSLRAKKDAIAKQ 362
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 307 EKWKKLLRQEEARKIIQDTEKLVSDE 230
EKW + R ++RK +QD ++ DE
Sbjct: 1237 EKWDGITRSWKSRKYVQDVSLIILDE 1262
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -3
Query: 445 LKQALREKLA-NRIHV-HSTYEDLHKYIPKEILPKDYGGDEESCSKLSEKWKKLLRQEEA 272
L A+R +L ++++ H+T D+H ++ K Y GD + + K L +Q++
Sbjct: 25 LPLAIRRELTWGQVNILHTT--DIHGWLAGHARDKRYSGDLGDFASFVQHMKHLAKQKDV 82
Query: 271 RKIIQDTEKL 242
++ DT L
Sbjct: 83 DLLLVDTGDL 92
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = -3
Query: 427 EKLANRIHVHSTYEDLHKYIPKEILPKDYGGDEESCSKLSEKWKKLLRQEEARKIIQDTE 248
E N++H S Y H + ++ + ++ E + + E+ KK R+E+ R + + +
Sbjct: 367 ENRYNKLHA-SEYNHHHDWAVRQAIREEVAAVEAAKIRADEEKKKKEREEQVRLLQESAD 425
Query: 247 K 245
K
Sbjct: 426 K 426
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 466 VDKIIHL-LKQALREKLANRIHVHSTYEDLHKYIPKEILPKDYGGDEESCSKLSEKWKKL 290
VD+I + ++ L E+ +H+ +E K + ++I+ D D + E W +L
Sbjct: 1048 VDEIAEIAIENGLYEEAFRIYKIHNKHEQAMKVLVEDIVSLDRAQDYAETVEQPEVWSRL 1107
Query: 289 LRQE 278
+ +
Sbjct: 1108 AKAQ 1111
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -3
Query: 385 DLHKYIPKEILPKDYGGDEESCSKLSEKWKKLLRQEEARKIIQDTEKLVSDETKRHESKF 206
+++++ + I+P DY DE++ L+ + R EEA + D + + E +R S
Sbjct: 877 EVYRHSIERIVPGDYLHDEKTRDTLTRE-SPAFRSEEAVVEVADEDHPHASEAERAHSYS 935
Query: 205 NEE 197
N +
Sbjct: 936 NRK 938
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 730 ESYVTQFLTEKLEKFSILAYFRLCFMVGEYRLNFDYTPAERFII 599
E + QFL K+ F + + CF + +N D+ P + + I
Sbjct: 321 ERFSKQFLPNKISTFKPFSKYPACFKDIAFWINNDFNPNDFYEI 364
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 634 NFDYTPAERFIIDFKNIHIGLLIKINPVVVKKAEVL 527
+F ++P ER N+ IGL + P + KKA L
Sbjct: 149 HFQFSPLER-----TNLLIGLTTSVKPTLAKKASAL 179
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 78 GLESVRWPERCLPEEV 31
GL+ V+WP RC EE+
Sbjct: 323 GLKYVKWPGRCQIEEI 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,077
Number of Sequences: 5004
Number of extensions: 66973
Number of successful extensions: 215
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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