Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_P17
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0336 + 24167891-24167982,24168501-24168600,24169216-241693... 33 0.33
03_05_0960 + 29221087-29221091,29221370-29221468,29221773-292218... 31 1.0
10_08_0125 - 15000650-15001717 30 2.4
01_06_0703 - 31326790-31326894,31327015-31327126,31327324-313274... 29 4.1
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376... 29 5.4
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 28 7.2
08_01_0949 + 9417991-9417993,9419374-9419454,9419615-9419719,942... 28 7.2
06_03_1048 + 27146475-27146652,27146739-27146804,27146880-271469... 28 9.5
03_06_0660 - 35349264-35349375,35349914-35350017,35350211-353503... 28 9.5
>05_05_0336 +
24167891-24167982,24168501-24168600,24169216-24169375,
24170119-24170566,24171020-24171095,24171204-24171250,
24171345-24171528
Length = 368
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -3
Query: 412 RIHVHSTYEDLHKYIPKEILPKDYGGDEESCSKLSEKWKKL-LRQEEARKIIQDTEKLVS 236
+I ++ Y++ K I +++ D +EE +E+ + L L QEE R+ + +K ++
Sbjct: 263 KIDINDAYKEFEKEIQEDLQEVDDRLEEEEIDAAAEREEYLTLEQEEYRQRVDMLKKQLT 322
Query: 235 DETKRHESKFNEEYMGM 185
+ +K N + +GM
Sbjct: 323 ESKAARTTKANSKPVGM 339
>03_05_0960 +
29221087-29221091,29221370-29221468,29221773-29221815,
29222056-29222154,29222240-29222485,29222633-29222941
Length = 266
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Frame = -3
Query: 487 ILNAPTFVDKIIHLLKQALREKLANRIH-VHSTYED----LHKYIPKEILPKDYGGDEES 323
+ N P + ++K L K +++ V+ E+ LHKYI E+LP ++GG + +
Sbjct: 152 LFNPPKVFEAFWKVVKHFLDPKSIQKVNFVYLKNEESMKILHKYIDPEVLPVEFGG-KNN 210
Query: 322 CSKLSEKWKKLLRQEEAR 269
E++ KL+ +++ +
Sbjct: 211 VVYSHEEYSKLMVKDDIK 228
>10_08_0125 - 15000650-15001717
Length = 355
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 12 FNSFRSPPLQASISLAIARSPIQKTNLSXSGHGXQ 116
F SF SPP+ ++ +I S ++KT S HG Q
Sbjct: 305 FLSFMSPPIVEDLNSSIFGSELEKTVSSSENHGSQ 339
>01_06_0703 -
31326790-31326894,31327015-31327126,31327324-31327445,
31327573-31327658,31327783-31327901,31327991-31328053,
31328142-31328221,31328801-31328921,31329040-31329125,
31329318-31329413,31329510-31329584,31329869-31330210
Length = 468
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = -3
Query: 415 NRIHVHSTYEDLHKYI-PKEILPKDYG----GDEESCSKLSEKWKKLLRQEEARKIIQDT 251
N +H H +H+ + P IL D G D + C L KW++ +R+E+A +
Sbjct: 270 NYLHEHKPQAIIHRDLEPSNILRDDTGHLKVADFDLCKML--KWRRKVREEKAVTSPGNA 327
Query: 250 EKLVSDETKRHE 215
+ V+ E R+E
Sbjct: 328 CRYVAPEVLRNE 339
>05_06_0271 +
26836396-26836610,26836793-26836872,26837573-26837641,
26837694-26837985,26838303-26838399,26838478-26838744,
26838832-26838909,26839019-26839120,26839251-26839300,
26839383-26839482,26839645-26839743,26839840-26839968,
26840319-26840427,26840652-26841055,26841140-26841280,
26841373-26841393
Length = 750
Score = 28.7 bits (61), Expect = 5.4
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = -3
Query: 604 IIDFKNIHIGLLIKINPVVVKKAEVLCTEGIGTKIKGIHILNAPTFVDKIIHLLKQALRE 425
I+D + + + K ++ + + + + ++ ++I+NA + +K L
Sbjct: 334 ILDVQGVGLKNFSKAARDLITRLQKIDNDNYPETLRRMYIINAGQGFKMLWSTVKSFLDP 393
Query: 424 KLANRIHV-HSTYED-LHKYIPKEILPKDYGG 335
K A++IHV S Y++ L + I + LP+ +GG
Sbjct: 394 KTASKIHVLGSKYQNKLLEIIDENELPEFFGG 425
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -3
Query: 430 REKLANRIHVHSTYEDLHKYIPKEILPKDYGGDEESCSKLSEKWKKLLRQEEARKIIQDT 251
REK R H +D + +EI+ ++ DEE K + L +E R+ +++
Sbjct: 504 REKEYQRQHEKEREKDRERERKREIMKQEDDSDEEDNRKRRRRSSGTL-EERKRRRLREK 562
Query: 250 EKLVSDETKRHE 215
E+ ++D+ + E
Sbjct: 563 EEDLADKLREEE 574
>08_01_0949 +
9417991-9417993,9419374-9419454,9419615-9419719,
9420884-9421033,9421485-9421709
Length = 187
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -3
Query: 334 DEESCSKLSEKWKKLLRQEEARKIIQDTEKLVSDETKRHESKFNEEYM 191
DE KLS +W+K +E I QD L+S + H FNE+ M
Sbjct: 23 DEYELKKLSTRWQKKFGEE----IDQDLLYLISVDRILHIEDFNEDGM 66
>06_03_1048 +
27146475-27146652,27146739-27146804,27146880-27146975,
27147073-27147152,27148165-27148209,27148326-27148420,
27148623-27148632
Length = 189
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -3
Query: 520 EGIGTKIKGIHILNAPTFVDKIIHLLKQALREKLANRIHVHSTYEDLHKYI 368
+G+G+K+ + I + PTF + ++ AN + ST E LHK +
Sbjct: 141 DGVGSKLSDLKIFSVPTF--HFYYQGRKTGEVVGANATKLESTMESLHKQL 189
>03_06_0660 -
35349264-35349375,35349914-35350017,35350211-35350368,
35350899-35350986,35352927-35353025,35353377-35353472,
35353591-35353628,35357960-35358285,35358600-35358796
Length = 405
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -3
Query: 364 KEILPKDYGGDEESCSKLSEKWKKLLRQEEARKIIQDTEKLVSDETKRHESK 209
+E P+ G+ C+++ +W+ EARK QD S E + E++
Sbjct: 89 REAQPRRSMGNPTQCARIHSRWRVHPTSLEARKANQDATMSGSTEARCAEAR 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,382,115
Number of Sequences: 37544
Number of extensions: 376520
Number of successful extensions: 970
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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