Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_P17
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46996-9|CAA87097.2| 400|Caenorhabditis elegans Hypothetical pr... 35 0.056
Z74041-4|CAD56597.1| 394|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z74041-3|CAA98522.1| 368|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical p... 32 0.39
Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical p... 32 0.39
Z81507-2|CAB04135.1| 388|Caenorhabditis elegans Hypothetical pr... 32 0.39
AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like p... 32 0.39
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 31 0.91
Z72508-9|CAA96639.2| 410|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 29 4.8
Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 28 6.4
Z22180-9|CAO82051.1| 304|Caenorhabditis elegans Hypothetical pr... 28 8.5
L23646-9|AAM48529.1| 379|Caenorhabditis elegans Hypothetical pr... 28 8.5
L23646-8|AAM48530.1| 411|Caenorhabditis elegans Hypothetical pr... 28 8.5
L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical pr... 28 8.5
L23646-6|AAU87821.1| 469|Caenorhabditis elegans Hypothetical pr... 28 8.5
AF077545-3|AAC26304.1| 396|Caenorhabditis elegans Hypothetical ... 28 8.5
>Z46996-9|CAA87097.2| 400|Caenorhabditis elegans Hypothetical
protein C34C12.6 protein.
Length = 400
Score = 35.1 bits (77), Expect = 0.056
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -3
Query: 502 IKGIHILNAPTFVDKIIHLLKQALREKLANRIHVHSTYEDLH-KYIPKEILPKDYGGD 332
++ I++ N P + + + + L E+ RI + S DL K++P ++PK+YGG+
Sbjct: 208 VQRIYLTNPPRLLGLLWKVARVFLSEENLKRIEIISDKSDLAGKFLPPWLVPKEYGGE 265
>Z74041-4|CAD56597.1| 394|Caenorhabditis elegans Hypothetical
protein T03F7.7b protein.
Length = 394
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 487 ILNAPTFVDKIIHLLKQALREKLANRIHVHSTYEDLHKYIPKEILPKDYGG 335
++N P + + + K+ + ++ S EDL KY+ E +P +YGG
Sbjct: 202 LINPPGIISVMWQVTKRLVDPNTVEKLAFLSNVEDLKKYLEPEAIPVEYGG 252
>Z74041-3|CAA98522.1| 368|Caenorhabditis elegans Hypothetical
protein T03F7.7a protein.
Length = 368
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 487 ILNAPTFVDKIIHLLKQALREKLANRIHVHSTYEDLHKYIPKEILPKDYGG 335
++N P + + + K+ + ++ S EDL KY+ E +P +YGG
Sbjct: 202 LINPPGIISVMWQVTKRLVDPNTVEKLAFLSNVEDLKKYLEPEAIPVEYGG 252
>Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical
protein JC8.12b protein.
Length = 304
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 224 LCFIAD*FFGVLYNFSCFLLPEKLFPFFTQLRAGFFITAIVFRQYFL-WYIFVEIFIGAM 400
+ F F GVL++F+ F EK P Q+ + F Y+L Y+F +++ G +
Sbjct: 212 IVFAVSMFAGVLFHFTTFSCLEKNGPLNMQIVSNVRAVVETFLAYYLSVYLFYDVYPGVL 271
Query: 401 N 403
N
Sbjct: 272 N 272
>Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical
protein JC8.12a protein.
Length = 315
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 224 LCFIAD*FFGVLYNFSCFLLPEKLFPFFTQLRAGFFITAIVFRQYFL-WYIFVEIFIGAM 400
+ F F GVL++F+ F EK P Q+ + F Y+L Y+F +++ G +
Sbjct: 223 IVFAVSMFAGVLFHFTTFSCLEKNGPLNMQIVSNVRAVVETFLAYYLSVYLFYDVYPGVL 282
Query: 401 N 403
N
Sbjct: 283 N 283
>Z81507-2|CAB04135.1| 388|Caenorhabditis elegans Hypothetical
protein F18A11.2 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 502 IKGIHILNAPTFVDKIIHLLKQALREKLANRIHVHS--TYEDLHKYIPKEILPKDYGGDE 329
++ I I+NAP+FV+ + L E +I + S + K+ K LP D GGD
Sbjct: 184 LQKIIIVNAPSFVNVLHQACSPFLPEDYKEKIVITSEPAIGAIQKHADKCFLPSDLGGDL 243
Query: 328 ESCSKL 311
E + L
Sbjct: 244 EKTTSL 249
>AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like
protein protein.
Length = 315
Score = 32.3 bits (70), Expect = 0.39
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 224 LCFIAD*FFGVLYNFSCFLLPEKLFPFFTQLRAGFFITAIVFRQYFL-WYIFVEIFIGAM 400
+ F F GVL++F+ F EK P Q+ + F Y+L Y+F +++ G +
Sbjct: 223 IVFAVSMFAGVLFHFTTFSCLEKNGPLNMQIVSNVRAVVETFLAYYLSVYLFYDVYPGVL 282
Query: 401 N 403
N
Sbjct: 283 N 283
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 31.1 bits (67), Expect = 0.91
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 346 DYGGDEESCSKLSEKWKKLLRQEEARK-IIQDTEKLVSDETKRHESKFNEEYMGMPG 179
DYG DE+S L +K + LL EA K I+D K S + K+ E+ MG G
Sbjct: 934 DYGKDEDSAEALLKKHRALLSDLEAFKGTIEDLRKQAS------QCKYQEQPMGQLG 984
>Z72508-9|CAA96639.2| 410|Caenorhabditis elegans Hypothetical
protein F28H7.8 protein.
Length = 410
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -3
Query: 487 ILNAPTFVDKIIHLLKQALREKLANRI-HVHSTY-EDLHKYIPKEILPKDYGG 335
++N+P++++ + L + E+ RI S + E+L + KE LP+ YGG
Sbjct: 199 VINSPSYINVLWSALSPFIPEQSKQRIVFAGSNWKEELLDIVDKECLPERYGG 251
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 28.7 bits (61), Expect = 4.8
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = -3
Query: 457 IIHLLKQALREKLANRIHVHSTYE---DLHKYIPKEILPKDYGGDEESCSKLSEKWKKLL 287
II LL++ + EK + S + L K I KE + G E + S+ L
Sbjct: 307 IIELLRRKIAEKKKSNTVKGSDRKKITSLKKAIAKEQEKLEKGKKELEQLQSSKTESDLE 366
Query: 286 RQEEARKI-IQDTEKLVSDETKRHESKFNE 200
+ A ++ I D +K + D K HE FN+
Sbjct: 367 EEISAMQLEINDYDKQIKDAAKEHEKLFNQ 396
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 28.7 bits (61), Expect = 4.8
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = -3
Query: 457 IIHLLKQALREKLANRIHVHSTYE---DLHKYIPKEILPKDYGGDEESCSKLSEKWKKLL 287
II LL++ + EK + S + L K I KE + G E + S+ L
Sbjct: 307 IIELLRRKIAEKKKSNTVKGSDRKKITSLKKAIAKEQEKLEKGKKELEQLQSSKTESDLE 366
Query: 286 RQEEARKI-IQDTEKLVSDETKRHESKFNE 200
+ A ++ I D +K + D K HE FN+
Sbjct: 367 EEISAMQLEINDYDKQIKDAAKEHEKLFNQ 396
>Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical
protein F58B3.4 protein.
Length = 601
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -3
Query: 370 IPKEILPKDYGGDEESCSKLSEKWKKLLRQEEARKIIQDTEKLVSDETKRHESKFNEEYM 191
+ KE + K DE+ +L + + + E+A + D E +SDE E + E +
Sbjct: 88 LKKEKISKKTTKDEDD--ELDDFFDEKDDDEDALEDADDEEDEISDEENEDEEEEENEKI 145
Query: 190 GMPGSFRRL 164
GM G F+RL
Sbjct: 146 GMNG-FKRL 153
>Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical
protein T13H5.2 protein.
Length = 408
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = -3
Query: 502 IKGIHILNAPTFVDKIIHLLKQALREKLANRIHV--HSTYEDLHKYIPKEILPKDYGGDE 329
I+ I I+N PTF+ + ++ L ++ ++ + + + L + I +E+L + +GG
Sbjct: 207 IRKIFIVNTPTFIQVLWSMISPCLAKQTQQKVKILGNDWKQHLKENIGEEVLFERWGGTR 266
Query: 328 ES 323
++
Sbjct: 267 KA 268
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 304 KWKKLLRQEEARKIIQDTEKLVSDE-TKRHESKFNEE 197
K +KL R+EE ++ Q+ EKL++D+ KR K E
Sbjct: 245 KQEKLQREEEMKQQNQEREKLIADDFEKRKLEKLQRE 281
>Z22180-9|CAO82051.1| 304|Caenorhabditis elegans Hypothetical
protein K11H3.1c protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Frame = -3
Query: 544 KKAEVLCTEGIGTKIKGIHILNAPTFVDKIIHLLKQALREKLANRIHVHSTYEDLH---K 374
KK ++ + G+ I I +F D+ ++ + E++ N + + H K
Sbjct: 4 KKVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHENIK 63
Query: 373 YIPKEILPKDYGGDEE---SCSKLSEKWKKLLRQE 278
Y+P ++LP + G E +SE+ K++L+ E
Sbjct: 64 YLPGKVLPNNVGVSTEKRGGLKLISEEIKEILKIE 98
>L23646-9|AAM48529.1| 379|Caenorhabditis elegans Hypothetical
protein F44E2.7b protein.
Length = 379
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -3
Query: 388 EDLHKYIPKEILPK----DYGGDEESCSKLSEKWKKLLRQEEARKIIQDTEKLVSDETKR 221
+D + Y+ ++ PK D S + +EK +KLL ++ + + K +DE K+
Sbjct: 12 DDYYDYVYEDEKPKRRRIDVEQSRRSVAAAAEKHRKLLEEQRRKAEAEYERKRKADEKKK 71
Query: 220 HESKFNEE 197
++ +EE
Sbjct: 72 EKAIKDEE 79
>L23646-8|AAM48530.1| 411|Caenorhabditis elegans Hypothetical
protein F44E2.7c protein.
Length = 411
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -3
Query: 388 EDLHKYIPKEILPK----DYGGDEESCSKLSEKWKKLLRQEEARKIIQDTEKLVSDETKR 221
+D + Y+ ++ PK D S + +EK +KLL ++ + + K +DE K+
Sbjct: 44 DDYYDYVYEDEKPKRRRIDVEQSRRSVAAAAEKHRKLLEEQRRKAEAEYERKRKADEKKK 103
Query: 220 HESKFNEE 197
++ +EE
Sbjct: 104 EKAIKDEE 111
>L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical
protein F44E2.7a protein.
Length = 471
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -3
Query: 388 EDLHKYIPKEILPK----DYGGDEESCSKLSEKWKKLLRQEEARKIIQDTEKLVSDETKR 221
+D + Y+ ++ PK D S + +EK +KLL ++ + + K +DE K+
Sbjct: 104 DDYYDYVYEDEKPKRRRIDVEQSRRSVAAAAEKHRKLLEEQRRKAEAEYERKRKADEKKK 163
Query: 220 HESKFNEE 197
++ +EE
Sbjct: 164 EKAIKDEE 171
>L23646-6|AAU87821.1| 469|Caenorhabditis elegans Hypothetical
protein F44E2.7d protein.
Length = 469
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -3
Query: 388 EDLHKYIPKEILPK----DYGGDEESCSKLSEKWKKLLRQEEARKIIQDTEKLVSDETKR 221
+D + Y+ ++ PK D S + +EK +KLL ++ + + K +DE K+
Sbjct: 102 DDYYDYVYEDEKPKRRRIDVEQSRRSVAAAAEKHRKLLEEQRRKAEAEYERKRKADEKKK 161
Query: 220 HESKFNEE 197
++ +EE
Sbjct: 162 EKAIKDEE 169
>AF077545-3|AAC26304.1| 396|Caenorhabditis elegans Hypothetical
protein H41C03.1 protein.
Length = 396
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -3
Query: 502 IKGIHILNAPTFVDKIIHLLKQALREKLANRIHVHSTYED----LHKYIPKEILPKDYGG 335
I + ++NAP+F+ + + L E+ N++ + S D + K+ + +PK +GG
Sbjct: 180 INTLFLINAPSFMTLLWKAIGPLLPERTRNKVRICSGNSDWKTSVQKHAHIDNIPKHWGG 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,612
Number of Sequences: 27780
Number of extensions: 362591
Number of successful extensions: 1087
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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