Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P16
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    29   0.77 
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   4.1  
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.2  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    25   9.5  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    25   9.5  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 294  NYINLFIYKKYLLFISV*FINIYLSTAYLFITYIEEKFTSKNWYLA 157
            N+  +FI  +Y+  IS+  + +     +LF  +I E +  KN YLA
Sbjct: 1431 NFKLVFIEMQYINIISIIVLVLTSLAWFLFNIFISEHYPDKNLYLA 1476


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 748 SDPPPLHWKALIFCQPVMDLLSSNLSQLCMCLVLSFFYCNIALL 617
           +DP  L  KA +  + ++ +LSSN+ Q    L+  F Y  I LL
Sbjct: 307 ADPNFLKPKAAMILEKILSILSSNIIQ--SDLLRGFLYTTIGLL 348


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 95 EDKMDXATEKKKTGTHS 45
          +DKMD ATEK K+G  S
Sbjct: 24 DDKMDEATEKFKSGNSS 40


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 291 YINLFIYKKYLLFISV*FINIYLSTAYLFITYIEEK 184
           ++  F Y+ YL++    +++  LST +L I Y  +K
Sbjct: 155 FVITFSYRPYLMYYGPTYLSWELSTPFLNIHYFLDK 190


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 441 KIEHSQFTTNQSTKTLTQRIYVSQKQNVHHYNKY 542
           KI+H  F T ++     +R+   Q + V HY  Y
Sbjct: 3   KIQHISFITKKNPLVSYERVGALQNRFVQHYLNY 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,136
Number of Sequences: 5004
Number of extensions: 53880
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)