Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P16
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    28   9.9  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    28   9.9  

>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 332 LKEIFFHEIFTIYRFSQCFISG--*IESSQILKKFVQLKDRTFS-IYNKSIN*NIDTTHL 502
           + E++  +  TIYR+  C +SG      S++L       D+ F+   N+++  N+  TH 
Sbjct: 14  IMEVYLGDDGTIYRYYICPVSGRTFTMKSEVLHYLFSEMDQCFTESKNRAVGSNLTRTHE 73

Query: 503 RFPK 514
             PK
Sbjct: 74  WLPK 77


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 380 QCFISG*IESSQILKKFVQLKDRTFSIYNKSIN*NIDT---THLRFPKT 517
           QCFI G +E S      V L+ +     +  I+ +IDT    H++FP+T
Sbjct: 70  QCFICGALEPSDGPAAKVSLQQQNTQRKDHEIDTDIDTPIRDHIKFPRT 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,548
Number of Sequences: 37544
Number of extensions: 278179
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)