Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P16
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AL032652-2|CAB63397.2|  322|Caenorhabditis elegans Hypothetical ...    29   5.1  
AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical...    29   5.1  
AC090999-15|AAK26154.1|  231|Caenorhabditis elegans Hypothetical...    29   5.1  

>Z49911-3|CAA90126.2|  735|Caenorhabditis elegans Hypothetical
           protein M28.4 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 300 DLVILYSNYVILKKYFFMKFSQFIDFLNVLSPGKLNHHRYSKNLYS*KIEHSQFTTNQST 479
           D V  Y  Y+ L +  +    QF+D +  LS   LN    +++L +   +   ++ N+S 
Sbjct: 537 DAVQEYQEYIELLEKSYSLSDQFVDIVKTLSSNALNMTLIARDLNNDYFDSGDWSINESI 596

Query: 480 KTL 488
             L
Sbjct: 597 TAL 599


>AL032652-2|CAB63397.2|  322|Caenorhabditis elegans Hypothetical
           protein Y63D3A.3 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 640 KNLTLNTYRVETD*NSTDPSLAD 708
           + L L TYR++TD NS + S+AD
Sbjct: 232 EKLILKTYRLDTDGNSVEDSVAD 254


>AC090999-16|AAP46261.1|  304|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14b protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +2

Query: 296 FRSSNTLFKLCNLKEIFFHEIFTIYRFSQCFISG*IESSQILKKFVQLKDRTFSIYNKSI 475
           ++++  L K  N  E F    F   +    F    I+ S  +  F      TFS+  K I
Sbjct: 87  WKNTKILIKNPNFSEFFGENPFLWEKHE--FFEKKIQFSIQISNFSAFLGATFSLVRKDI 144

Query: 476 N*NIDTTHLRFPKTE 520
             N+D   +RF K +
Sbjct: 145 QGNVDKVRVRFEKDQ 159


>AC090999-15|AAK26154.1|  231|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.14a protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 401 IESSQILKKFVQLKDRTFSIYNKSIN*NIDTTHLRFPKTE 520
           + + Q +  FV     TFS+  K I  N+D   +RF K +
Sbjct: 47  LSACQGIADFVSFLGATFSLVRKDIQGNVDKVRVRFEKDQ 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,930,579
Number of Sequences: 27780
Number of extensions: 301243
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)