Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P16
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   5.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   5.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 754 ILSDPPPLHWKALIFCQPVMDLLSSNLSQLCMCLVLSFFYCNI 626
           +L D    H    +   P   ++SS++S    C+V+   YC +
Sbjct: 173 VLDDSKEEHPTCALDLTPTYAVVSSSISFYVPCIVMLGIYCRL 215


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 643 NLTLNTYRVETD*NSTDPSLADKKLKLSNAMEVGRLKFE 759
           N    T+++      T PSL D+K +   ++E    K E
Sbjct: 55  NTYTKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTE 93


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 643 NLTLNTYRVETD*NSTDPSLADKKLKLSNAMEVGRLKFE 759
           N    T+++      T PSL D+K +   ++E    K E
Sbjct: 57  NTYTKTFKMNVPFEETLPSLPDRKFQTVTSIEGNTFKTE 95


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 327 HNLNRVLLDLNNYINLFIYKKYLLFI 250
           +N N    + NNY     YK Y++ I
Sbjct: 324 YNNNNYKYNYNNYNKKLYYKNYIINI 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,035
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)