Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P17_pT_P12
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 159 3e-40
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar... 30 0.26
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 1.4
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 27 1.4
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 4.2
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 7.3
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 25 9.6
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi... 25 9.6
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 9.6
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 159 bits (385), Expect = 3e-40
Identities = 70/120 (58%), Positives = 93/120 (77%), Gaps = 2/120 (1%)
Frame = -3
Query: 421 PLPNVNSAILKKVIQWATYHKDD--PPLPEDDENKEKRTDDISSWDADFLKVDQGTLFEL 248
PLPNV+S +L+KV++W +HK+D E+ + + K++ DI WD F+ VDQ LFE+
Sbjct: 42 PLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEI 101
Query: 247 ILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 68
+LA+NYLDIK LLD CKTVANMI+GK+PE+IRKTFNI NDFT EE+Q+RKENEW E++
Sbjct: 102 VLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWAEDR 161
>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.26
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 349 PLPEDDENKEKRTDDISSWDADFLKVDQGT 260
P+P D NK T D+SSW+ D+ + G+
Sbjct: 9 PIPRSDSNK---TSDVSSWEEDYELISLGS 35
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 211 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQV 98
L VT KTV + G TP+ R+ N+ D + + V
Sbjct: 96 LQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSHV 133
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 349 PLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA-ANYLDIKGLLDVTCKTVA 185
P +DD N + +DD S+ D ++D L E +L N + L D+T T+A
Sbjct: 207 PEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCSTQDLADMTGCTLA 262
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 18 HSDNT*RCLQIAFIMVYFS 74
H+D+ RCL++AF YFS
Sbjct: 746 HADDFFRCLEVAFDYPYFS 764
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 7.3
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Frame = -3
Query: 382 IQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFEL---ILAANYLDIKGL 212
+ WA+YH ++P T+ + W AD L D+ + L I+ N +K +
Sbjct: 138 LMWASYHGNEP-----------ITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLI 186
Query: 211 L---DVTCKTVANMIKG--KTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 71
L + C V + G KTP + + + F A K E EE
Sbjct: 187 LKEGGIPCTAVTANLSGQLKTPWALASELRVSHLFKQALISNGLKVKETSEE 238
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 391 KKVIQWATYHKDDPPLPEDDENKEKR 314
K+ IQ K +PP PE+ E KE +
Sbjct: 92 KETIQPPEEVKTEPPQPEEKEGKEAK 117
>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 105
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 41 LANSIYYGLLFFTPFILFTNLIFFCSSEIILNV 139
L++ + L FF PFI+ FC+++ ++N+
Sbjct: 6 LSDFLLIVLSFFVPFIVVGIRRGFCTADFLINI 38
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = -3
Query: 418 LPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA 239
+ +V S L + T+ + L E EN+ + +S+W +V LILA
Sbjct: 15 IKDVESEFLTSIPNGLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQVLNAMCVVLILA 74
Query: 238 A 236
A
Sbjct: 75 A 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,904
Number of Sequences: 5004
Number of extensions: 39304
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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