Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P11
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    28   0.89 
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   1.6  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   6.3  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 206 FVLSLFYTKV*VFYLSIEAL---RSLPGRLVINICLNKYLFQSV 328
           FV   +++ + +  L++E L   R  P R VIN+    Y+FQ++
Sbjct: 154 FVYMTYFSHILILALTVEHLYLQRDSPSRPVINVSFFNYIFQNL 197


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 234 TFV*NKLKTNKRNPSGEGQIKGKTKLLYLFNSEHFHIYLPFKPSL 100
           +FV NK + + R P     +  K +L+Y     + H++L + PSL
Sbjct: 204 SFVDNKTRFSSRKPGASQILSSKVQLMY-----YVHLFLNYFPSL 243


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 373 NDLKIVYSKLLESEMYLSIAKGVF-CKSIISL 465
           ND+ I +   L +E+Y  I++G+  CK I +L
Sbjct: 353 NDINIYFGTRLPNEIYFYISRGLIPCKMIGAL 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,509
Number of Sequences: 5004
Number of extensions: 45619
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)