Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P11
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    30   1.2  
12_02_0229 - 15940144-15940451,15940879-15941380,15941594-159417...    27   8.5  
05_05_0063 - 22053681-22053896,22054373-22054401,22054672-22054759     27   8.5  

>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 272 DFVVPQSINKRPKLLYKINLKQTKGIRPARDKSKEKQNCYIYLIPSIFI 126
           DF++P  +   P +L  +++    G   A     EK   Y YL P + I
Sbjct: 310 DFLLPTVVGCLPMILQNVSIVSLAGAAVASTTGSEKSRIYSYLFPVLGI 358


>12_02_0229 -
           15940144-15940451,15940879-15941380,15941594-15941727,
           15941954-15942238,15942965-15943463,15944064-15944350,
           15944702-15944801
          Length = 704

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 24/89 (26%), Positives = 36/89 (40%)
 Frame = -1

Query: 284 ADPADFVVPQSINKRPKLLYKINLKQTKGIRPARDKSKEKQNCYIYLIPSIFIFIYRLNL 105
           AD  D  +  + +  P  +  INL  +  ++ ++  S       I   P IF F    NL
Sbjct: 326 ADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKFSSLASVVPEIQTKPGIFTF----NL 381

Query: 104 LWPSTKNSRPKLAKSVQPFSSFKRD*RTA 18
            W      RPK+     P+  F R+ R A
Sbjct: 382 TWEEISTLRPKI---THPYHDFVRNPRYA 407


>05_05_0063 - 22053681-22053896,22054373-22054401,22054672-22054759
          Length = 110

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 260 PQSINKRPKLLYKINLKQTKGIRPARDKSKEKQ 162
           P+SI  +PK    IN K T+GI+  + K+K+ Q
Sbjct: 81  PRSIKAKPK----INHKSTRGIKKHKGKAKKNQ 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,711,140
Number of Sequences: 37544
Number of extensions: 223631
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)