Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P17_pT_P11
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylser...    29   3.3  
U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylser...    29   3.3  
U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho...    29   3.3  
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho...    29   3.3  
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh...    29   3.3  
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p...    29   3.3  
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    27   7.6  

>U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform b protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 155 YIYLIPSIFIFIYRLNLLWPSTKNSRPKLAK 63
           Y   +   +  +  L+L+WP T   RPKL+K
Sbjct: 169 YTIAVTHNYCSVENLHLVWPKTVKGRPKLSK 199


>U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform a protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 155 YIYLIPSIFIFIYRLNLLWPSTKNSRPKLAK 63
           Y   +   +  +  L+L+WP T   RPKL+K
Sbjct: 285 YTIAVTHNYCSVENLHLVWPKTVKGRPKLSK 315


>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform b protein.
          Length = 1294

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 132 FHIYLPFKPSLAFHKKFKTKISQIGPAVLEF 40
           F I++PF+P   F  K+KT    I  A+L F
Sbjct: 504 FFIHIPFQPPANFMTKYKTVADPIMRALLRF 534


>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform a protein.
          Length = 1331

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 132 FHIYLPFKPSLAFHKKFKTKISQIGPAVLEF 40
           F I++PF+P   F  K+KT    I  A+L F
Sbjct: 541 FFIHIPFQPPANFMTKYKTVADPIMRALLRF 571


>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1331

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 132 FHIYLPFKPSLAFHKKFKTKISQIGPAVLEF 40
           F I++PF+P   F  K+KT    I  A+L F
Sbjct: 541 FFIHIPFQPPANFMTKYKTVADPIMRALLRF 571


>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1331

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 132 FHIYLPFKPSLAFHKKFKTKISQIGPAVLEF 40
           F I++PF+P   F  K+KT    I  A+L F
Sbjct: 541 FFIHIPFQPPANFMTKYKTVADPIMRALLRF 571


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical protein
            F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 275  ADFVVPQSINKRPKLLYKINLKQTKGIRPARDKSKEKQNCYIYLIPSI 132
            A++ + + +N+ P  + ++NLK+ K   P     +EK   +I+L+ S+
Sbjct: 997  AEWTLDRLLNEDPAFVERLNLKEVKAPEPEDPDKREK---WIFLLRSM 1041


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical protein
            F56H9.5 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 275  ADFVVPQSINKRPKLLYKINLKQTKGIRPARDKSKEKQNCYIYLIPSI 132
            A++ + + +N+ P  + ++NLK+ K   P     +EK   +I+L+ S+
Sbjct: 997  AEWTLDRLLNEDPAFVERLNLKEVKAPEPEDPDKREK---WIFLLRSM 1041


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
            protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = -1

Query: 275  ADFVVPQSINKRPKLLYKINLKQTKGIRPARDKSKEKQNCYIYLIPSI 132
            A++ + + +N+ P  + ++NLK+ K   P     +EK   +I+L+ S+
Sbjct: 997  AEWTLDRLLNEDPAFVERLNLKEVKAPEPEDPDKREK---WIFLLRSM 1041


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,327
Number of Sequences: 27780
Number of extensions: 236541
Number of successful extensions: 563
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)